YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC926.05c
Organism:	Schizosaccharomyces pombe
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC926.05c.

Description	E-value	Query Range	Subject Range
gi\|82703356, gi\|... - gi\|82703356\|ref\|YP_412922.1\| heat shock protein DnaJ [Nitrosospira multiformis ATCC 25196], gi\|82411...	138.0	[0..2]	[125..14]
gi\|108804351, gi... - gi\|68562224\|ref\|ZP_00601494.1\| DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone Dna...	138.0	[0..2]	[124..7]
gi\|94676848, gi\|... - gi\|94676848\|ref\|YP_588982.1\| chaperone protein DnaJ [Baumannia cicadellinicola str. Hc (Homalodisca ...	135.0	[0..2]	[125..5]
DNAJ_ROSS1 - Chaperone protein DnaJ OS=Roseiflexus sp. (strain RS-1) GN=dnaJ PE=3 SV=1	133.0	[0..2]	[124..6]
gi\|94987127, gi\|... - gi\|94987127\|ref\|YP_595060.1\| DnaJ-like molecular chaperone [Lawsonia intracellularis PHE/MN1-00], gi...	133.0	[0..2]	[124..5]
DNAJ_CARHZ - Chaperone protein DnaJ OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901...	132.0	[0..2]	[125..4]
DNAJ_PHOLL - Chaperone protein DnaJ OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 /... DNAJ_PHOLL - Chaperone protein dnaJ OS=Photorhabdus luminescens subsp. laumondii GN=dnaJ PE=3 SV=1	132.0	[0..2]	[125..5]
gi\|46201302 - gi\|46201302\|ref\|ZP_00055306.2\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom...	132.0	[0..2]	[125..5]
DNAJ_BLOPB - Chaperone protein DnaJ OS=Blochmannia pennsylvanicus (strain BPEN) GN=dnaJ PE=3 SV=1	131.0	[0..2]	[127..5]
gi\|85720984, gi\|... - gi\|85857893\|ref\|YP_460095.1\| chaperone protein [Syntrophus aciditrophicus SB], gi\|85720984\|gb\|ABC759...	131.0	[0..2]	[125..3]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHYSVLNLK DGKTYTDDEI KEAYRKALLL FHPDKCKEKP SVVYTIDQVK EAYQVLSSEK  60
   61 DRQQYQIKQE EESSHYYS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.0
Match:	1xblA
Description:	NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.03854863870179	bayes_pls_golite062009
protein binding	1.59319415069732	bayes_pls_golite062009
nucleic acid binding	0.423488346839872	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.290883150382299	bayes_pls_golite062009
unfolded protein binding	0.26936882742456	bayes_pls_golite062009
kinase activity	0.256507044529735	bayes_pls_golite062009
transferase activity	0.240656521918556	bayes_pls_golite062009
transcription regulator activity	0.217789331467722	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.169851030812486	bayes_pls_golite062009
heat shock protein binding	0.162050450070629	bayes_pls_golite062009
catalytic activity	0.106988907594358	bayes_pls_golite062009
DNA binding	0.10307408349439	bayes_pls_golite062009
protein kinase activity	0.0820836328401214	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [79-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVDLSEFEEL DNGSYYYPCR CGDLGGYVVT EDDLENNRSV VPCMGCSLTI QVDYEIAESD  60
   61 S

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.98
Match:	1wgeA
Description:	Solution structure of the mouse DESR1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.49983036545301	bayes_pls_golite062009
protein binding	0.535832402793455	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: