YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPCC1672.12c

General Information:
Name(s) found: SPCC1672.12c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
SHOW ALL
  • DUF410 family protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 303 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [ISS]
    cytosol [IDALink to PubMed article]
    Biological Process: protein insertion into ER membrane [ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAKIKRAEG RLREDPYEGH QMLRTLVNRQ VKAKKHDDAV ALLYSGAKTL FEIEQTGSAA  60
   61 DLAIYMLDVY EKASYAASLD NKARALTLLG LFPAEEGARK QYVKRLLEWS KSAGPQGDKD 120
  121 VHFAVATMFV KWKEPASAEK HFVLGNEKSA RAYGETMYYW FTSDSSISPD TFAGRPVLNY 180
  181 LLAENLISAW NSLETFTKHF TKSNAPDVEN MSFDGKDFPV FKEYPQMNFL HLLIFTAYRK 240
  241 DKETYLSLVQ KYPKKQDWEA ALAKIEEIYF GIRPVSNQPN ILANLMSSLF SGPPAATNQL 300
  301 DLE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..303] FFAS03 1.2 Vesicular transport protein sec17

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.64850159998065 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.96534484578496 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.64804251600372 bayes_pls_golite062009
  • DNA binding
    		•  1.63530462331869 bayes_pls_golite062009
  • protein binding
    		•  1.51322932625387 bayes_pls_golite062009
  • transcription factor activity
    		•  0.941893540415683 bayes_pls_golite062009
  • transcription factor binding
    		•  0.370606597126089 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.0874081614883346 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle