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Protein Overview: SPAC30.02c

General Information:
Name(s) found: SPAC30.02c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • RNA polymerase II elongator complex subunit [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 281 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    chromosome [IEA]
    Biological Process: tRNA modification [ISSLink to PubMed article]
    Molecular Function: ATPase activity [ISSLink to PubMed article]
    ATP binding [ISSLink to PubMed article]
    chromatin binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLIIVSGYP SSGKTTRSNE LKKALEDRIH QNIDNTKDYR VIIINDESLN IEKETYRESK  60
   61 NEKAARGLLY SAVQRELSKS TFVICDALNY IKGFRYQLYC ESKSMYTTHC VIHVAVPQDL 120
  121 CRKFNSNKEQ PYPDDVLEQL MFRYEEPNGM TRWDSPLFTV LHDDASCPID DIWSVLIHNK 180
  181 NVKPNQATMV KPPAEVNYLY ELDKTTQDVI MLILDNSNDT SLITVPGSKL QIALPSVTVS 240
  241 LPLLQRLRRQ FIQINRQQSY NTNVLKEMFV EFLNGQFETL D

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..281] PSI-BLAST 46.522879 The crystal structure of human 3'-phosphoadenosine-5'-phosphosulfate synthetase 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.64537357529343 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.51683451033161 bayes_pls_golite062009
  • DNA binding
    		•  2.12258000781149 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.09345198747025 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.923452757551011 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.923391844349459 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.920821955769652 bayes_pls_golite062009
  • nucleotide binding
    		•  0.917754212279227 bayes_pls_golite062009
  • transcription factor activity
    		•  0.887108427603557 bayes_pls_golite062009
  • RNA helicase activity
    		•  0.81256037545135 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  0.74918137191219 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  0.69117331267457 bayes_pls_golite062009
  • ATP binding
    		•  0.60527666756293 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.573214556107072 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.554530910579109 bayes_pls_golite062009
  • ligase activity
    		•  0.417681194526243 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.243902356228423 bayes_pls_golite062009
  • protein binding
    		•  0.170837278876362 bayes_pls_golite062009
  • kinase activity
    		•  0.163756462988596 bayes_pls_golite062009
  • helicase activity
    		•  0.0775311459068899 bayes_pls_golite062009
  • RNA binding
    		•  0.0261282189186349 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle