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Protein Overview: ubx2

General Information:
Name(s) found: ubx2 / SPAC2C4.15c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • UBX domain protein Ubx2 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 427 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISSLink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    Biological Process: proteasomal ubiquitin-dependent protein catabolic process [IGILink to PubMed article]
    cellular response to stress [IEPLink to PubMed article]
    ubiquitin-dependent protein catabolic process [ISSLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]
    ubiquitin binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGDEASLVA NFCAITNSTP EKAQEYLSVA DGDLSTAITL FFESGGVTDV QSSYIEAPSQ  60
   61 TEPVEEIRAP IAPTREVLVD PLADMSAGTS IMGNNFGFGG FPRMNRRQRR RMGIFDQSPS 120
  121 QIPFPSSNTE DSSEESDSSS RASRLAKLFR PPYDIISNLS LDEARIEASS QKRWILVNLQ 180
  181 TSTSFECQVL NRDLWKDESV KEVIRAHFLF LQLLDDEEPG MEFKRFYPVR STPHIAILDP 240
  241 RTGERVKEWS KSFTPADFVI ALNDFLEGCT LDETSGRKNP LGAKSQKPVE AMSEDEQMHK 300
  301 AIAASLGNGN STTESQGESS SQQAESHGVA DDTVHKIDSA ECDAEEPSPG PNVTRIQIRM 360
  361 PNGARFIRRF SLTDPVSKVY AYVKGVAEGA DKQPFSLTFQ RKSLWTSLDS TIKEAGIQNT 420
  421 ALQFEFQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..60] PSI-BLAST 6.0 No description for 2damA was found.
    2 View Details [61..148] deduced N/A No confident structure predictions are available.
    3 View Details [149..279] PSI-BLAST 17.045757 No description for 2dlxA was found.
    4 View Details [280..427] PSI-BLAST 17.0 Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • catalytic activity
    		•  0.672192331361968 bayes_pls_golite062009
  • binding
    		•  0.665189138843282 bayes_pls_golite062009
  • hydrolase activity
    		•  0.150237022038507 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.13699526678272 bayes_pls_golite062009
    4
    Term Confidence Notes
  • binding
    		•  2.19381585790185 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  1.83465130904364 bayes_pls_golite062009
  • protein binding
    		•  1.17197911794381 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  1.16468510691469 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.919595189902044 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.383121378043805 bayes_pls_golite062009
  • hydrolase activity
    		•  0.247201449341942 bayes_pls_golite062009
  • DNA binding
    		•  0.0840213088061073 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0485636215870291 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle