| Protein: | ubx2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 427 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubx2.
| Description | E-value | Query Range |
Subject Range |
|
|
212.0 | [0..6] | [424..864] |
|
|
206.0 | [0..2] | [427..7] |
|
|
205.0 | [0..2] | [424..10] |
|
|
205.0 | [0..2] | [424..10] |
|
|
204.0 | [0..2] | [424..11] |
|
|
203.0 | [0..2] | [424..10] |
|
|
201.0 | [0..6] | [424..15] |
|
|
197.0 | [0..1] | [424..6] |
|
Region A: Residues: [1-60] |
1 11 21 31 41 51
| | | | | |
1 MDGDEASLVA NFCAITNSTP EKAQEYLSVA DGDLSTAITL FFESGGVTDV QSSYIEAPSQ 60
61
|
| Detection Method: |  |
| Confidence: | 6.0 |
| Match: | 2damA |
| Description: | No description for 2damA was found. |
|
Region A: Residues: [61-148] |
1 11 21 31 41 51
| | | | | |
1 TEPVEEIRAP IAPTREVLVD PLADMSAGTS IMGNNFGFGG FPRMNRRQRR RMGIFDQSPS 60
61 QIPFPSSNTE DSSEESDSSS RASRLAKL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [149-279] |
1 11 21 31 41 51
| | | | | |
1 FRPPYDIISN LSLDEARIEA SSQKRWILVN LQTSTSFECQ VLNRDLWKDE SVKEVIRAHF 60
61 LFLQLLDDEE PGMEFKRFYP VRSTPHIAIL DPRTGERVKE WSKSFTPADF VIALNDFLEG 120
121 CTLDETSGRK N
|
| Detection Method: | |
| Confidence: | 17.045757 |
| Match: | 2dlxA |
| Description: | No description for 2dlxA was found. |
| Term | Confidence | Notes |
| catalytic activity | 0.672192331361968 | bayes_pls_golite062009 |
| binding | 0.665189138843282 | bayes_pls_golite062009 |
| hydrolase activity | 0.150237022038507 | bayes_pls_golite062009 |
| transcription regulator activity | 0.13699526678272 | bayes_pls_golite062009 |
|
Region A: Residues: [280-427] |
1 11 21 31 41 51
| | | | | |
1 PLGAKSQKPV EAMSEDEQMH KAIAASLGNG NSTTESQGES SSQQAESHGV ADDTVHKIDS 60
61 AECDAEEPSP GPNVTRIQIR MPNGARFIRR FSLTDPVSKV YAYVKGVAEG ADKQPFSLTF 120
121 QRKSLWTSLD STIKEAGIQN TALQFEFQ
|
| Detection Method: | |
| Confidence: | 17.0 |
| Match: | 1s3sG |
| Description: | Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.19381585790185 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.83465130904364 | bayes_pls_golite062009 |
| protein binding | 1.17197911794381 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.16468510691469 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.919595189902044 | bayes_pls_golite062009 |
| nucleic acid binding | 0.383121378043805 | bayes_pls_golite062009 |
| hydrolase activity | 0.247201449341942 | bayes_pls_golite062009 |
| DNA binding | 0.0840213088061073 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0485636215870291 | bayes_pls_golite062009 |
