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Protein Overview: SPBC1A4.07c

General Information:
Name(s) found: SPBC1A4.07c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • U3 snoRNP-associated protein Sof1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 436 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    spindle [IDALink to PubMed article]
    protein complex [RCALink to PubMed article]
    small nuclear ribonucleoprotein complex [ISSLink to PubMed article]
    nucleolus [IDALink to PubMed article]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: rRNA processing [ISSLink to PubMed article]
    Molecular Function: snoRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVKTITRGT SLTRLNDQDP VKRNLDPSLH PFERAREYTR ALNATKMDRM FAAPFLGQLG  60
   61 RGHQDGVYSL ARDTKTLIDC ASGSGDGAVK LWDASERCER WTSKAHEGIV RGLVFSNQGD 120
  121 VLSCASDRYV YMLNKQDGKV KRSYLGDSSL LDIDTSKGGD LFATSGENVS IWDYSRDTPV 180
  181 TKFEWGADTL PVVKFNYTET SVLASAGMDR SIVIYDLRTS SPLTKLITKL RTNSISWNPM 240
  241 EAFNFVAGSE DHNLYMYDMR NLKRALHVYK DHVSAVMSVD FSPTGQEFVS GSYDKTIRIY 300
  301 NVREGHSRDV YHTKRMQRVT AVKFSMDAQY IFSGSDDSNV RLWRARASSR ASIRSTREEN 360
  361 RLKYLDSLRE RYKHIPEIRR IARHRHLPTN VKKAAEIKRE EINSLKRREE NIRRHSKKGA 420
  421 VPYEKERERH VVGIQK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..436] PSI-BLAST 39.30103 Actin interacting protein 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • snoRNA binding
    		•  6.03079504484743 bayes_pls_golite062009
    		• 5.51602917776723 bayes_pls_golite062009
  • histone methyltransferase activity (H3-K4 specific)
    		•  4.71992275913384 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  3.25521258308263 bayes_pls_golite062009
  • GTPase activity
    		•  3.23750443966606 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  3.1056443224755 bayes_pls_golite062009
  • RNA binding
    		•  3.0829625416797 bayes_pls_golite062009
  • tubulin binding
    		•  2.76945430061825 bayes_pls_golite062009
  • microtubule binding
    		•  2.72684103222924 bayes_pls_golite062009
  • binding
    		•  2.42570478946173 bayes_pls_golite062009
  • actin binding
    		•  2.27900251096697 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  1.85632145559025 bayes_pls_golite062009
  • dynein binding
    		•  1.73730057055973 bayes_pls_golite062009
  • structural molecule activity
    		•  1.47097979074281 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  1.35170368882651 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.25687092973217 bayes_pls_golite062009
  • protein binding
    		•  1.21879977456466 bayes_pls_golite062009
  • transporter activity
    		•  1.21549336905926 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.20712373307552 bayes_pls_golite062009
  • protein-lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • histone-lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • receptor activity
    		•  1.12819778129653 bayes_pls_golite062009
  • G-protein-coupled receptor binding
    		•  1.11754260203517 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.974380908248463 bayes_pls_golite062009
  • signal transducer activity
    		•  0.974380908248463 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.734793983890004 bayes_pls_golite062009
  • DNA binding
    		•  0.711274653406079 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.702111212042669 bayes_pls_golite062009
  • histone binding
    		•  0.685319917508843 bayes_pls_golite062009
  • actin filament binding
    		•  0.554537899540618 bayes_pls_golite062009
  • dynactin binding
    		•  0.537498869132781 bayes_pls_golite062009
  • receptor binding
    		•  0.316169754698691 bayes_pls_golite062009
  • transcription factor activity
    		•  0.243992994917491 bayes_pls_golite062009
  • protein kinase activity
    		•  0.229242350006544 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.157016319695991 bayes_pls_golite062009
  • chromatin binding
    		•  0.145491963066342 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  0.118975415284669 bayes_pls_golite062009
  • kinase activity
    		•  0.08280915441667 bayes_pls_golite062009
  • mRNA binding
    		•  0.0519838181830878 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00585398682921312 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.00335766408304172 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle