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Protein Overview: sec13

General Information:
Name(s) found: sec13 / SPBC215.15 [Sanger Pombe]
Description(s) found:
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  • pir||T39905 protein transport protein sec13 homolog, WD domain containing - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74676182|sp|O94319.1|SEC13_SCHPO RecName: Full=Protein transport protein sec13 [NCBI NR]
  • gi|3873552|emb|CAA22129.1| COPII-coated vesicle component Sec13 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113484|ref|NP_596692.1| COPII-coated vesicle component Sec13 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • COPII-coated vesicle component Sec13 [Sanger Pombe]
  • Protein transport protein sec13 OS=Schizosaccharomyces pombe GN=sec13 PE=1 SV=1 [Swiss-Prot]
  • PUTATIVE COPII COAT PROTEIN; WD REPEAT PROTEIN;: O94319; [pompepVF.fasta]
  • Protein transport protein sec13 homolog, WD domain containing [pompep4896]
  • |sec13||WD repeat protein [pompepnew.fasta]
  • SPBC215.15 protein (Sec13 protein) [4896.FASTAC]
  • |sec13||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • protein transport protein sec13 homolog, WD domain containing [Schizosaccharomyces pombe]gi|3873552|emb|CAA22129.1| SPBC215.15 [Schizosaccharomyces pombe]gi|7493218|pir||T39905 protein transport protein sec13 homolog, WD domain containing - fission yeas [nrdb_11152004_Chlamydomonas]
  • (O94319) Protein transport protein sec13 homolog, WD domain containing [pompep4896_normal_reversed]
  • |sec13||COPII-coated vesicle component Sec13|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC215.15 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC215.15 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Protein transport protein sec13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec13 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 297 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    COPII vesicle coat [ISSLink to PubMed article]
    plasma membrane [ISSLink to PubMed article]
    nuclear pore [ISSLink to PubMed article]
    Biological Process: ER to Golgi vesicle-mediated transport [ISSLink to PubMed article]
    barrier septum formation [IMPLink to PubMed article]
    nuclear pore organization [ISSLink to PubMed article]
    intracellular protein transport [ICLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTVDTQHDD MIHDAILDYY GKRLATCSSD QTIKVFSIEN NQQTLLETLR GHSGPVWQLG  60
   61 WAHPKFGTIL ASASYDGHVI VWRETGGVWS ELMDHTAHQA SVNAVSWAPH EYGALLACAS 120
  121 SDGKVSVLEF KDDGSCDTRI FTAHEPGCNA VCWSPPSLSG SVVGQSPAAG PKKLATAGCD 180
  181 NLVKIWAFDA GVNNWILEDT LAGHVDWTRD VAWAPSVGLT KTYLASASQD KNVFIWTKEG 240
  241 DGPWQKTPLT EEKFPDIAWR VSWSLSGNIL AVSCGDNKVY LFKESQNKWQ LLNELSN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..297] PSI-BLAST 47.154902 No description for 2pm6B was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle