YRC Public Data Repository - Protein Structure Prediction

Protein:	sec13
Organism:	Schizosaccharomyces pombe
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec13.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	283.0	[0..2]	[297..1165]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	267.0	[0..1]	[297..1204]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	267.0	[0..2]	[296..641]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	266.0	[0..2]	[297..876]
gi\|116182430, gi... - gi\|88186140\|gb\|EAQ93608.1\| hypothetical protein CHGG_01843 [Chaetomium globosum CBS 148.51], gi\|1161...	264.0	[0..1]	[296..786]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	264.0	[0..2]	[291..1235]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTVDTQHDD MIHDAILDYY GKRLATCSSD QTIKVFSIEN NQQTLLETLR GHSGPVWQLG  60
   61 WAHPKFGTIL ASASYDGHVI VWRETGGVWS ELMDHTAHQA SVNAVSWAPH EYGALLACAS 120
  121 SDGKVSVLEF KDDGSCDTRI FTAHEPGCNA VCWSPPSLSG SVVGQSPAAG PKKLATAGCD 180
  181 NLVKIWAFDA GVNNWILEDT LAGHVDWTRD VAWAPSVGLT KTYLASASQD KNVFIWTKEG 240
  241 DGPWQKTPLT EEKFPDIAWR VSWSLSGNIL AVSCGDNKVY LFKESQNKWQ LLNELSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.154902
Match:	2pm6B
Description:	No description for 2pm6B was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits