YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: caf1

General Information:
Name(s) found: caf1 / SPCC18.06c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
SHOW ALL
  • CCR4-Not complex subunit Caf1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 332 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    CCR4-NOT core complex [ISSLink to PubMed article]
    Biological Process: nuclear-transcribed mRNA poly(A) tail shortening [IDALink to PubMed article]
    RNA elongation from RNA polymerase II promoter [ISSLink to PubMed article]
    regulation of transcription from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: magnesium ion binding [IEA]
    poly(A)-specific ribonuclease activity [IEA]
    3'-5'-exoribonuclease activity [IDALink to PubMed article]
    metal ion binding [IDALink to PubMed article]
    mRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSNFSYPAL GVDGISSQIS PIRDVWSTNL QQEMNLIMSL IERYPVVSMD TEFPGVVARP  60
   61 LGVFKSSDDY HYQTLRANVD SLKIIQIGLA LSDEEGNAPV EACTWQFNFT FNLQDDMYAP 120
  121 ESIELLTKSG IDFKKHQEVG IEPADFAELL IGSGLVLQEE VTWITFHSGY DFAYLLKAMT 180
  181 QIPLPAEYEE FYKILCIYFP KNYDIKYIMK SVLNNSKGLQ DIADDLQIHR IGPQHQAGSD 240
  241 ALLTARIFFE IRSRYFDGSI DSRMLNQLYG LGSTGSVLWH NNSSTPQIQF RDLPGAHPSP 300
  301 TPSNAGIPTT LTNTSSAPNF ANSTFRFPPR VV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..332] PSI-BLAST 132.0 No description for 2p51A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle