YRC Public Data Repository - Protein Structure Prediction

Protein:	caf1
Organism:	Schizosaccharomyces pombe
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for caf1.

Description	E-value	Query Range	Subject Range
Pop2-PA - The gene Pop2 is referred to in FlyBase by the symbol Dmel\Pop2 (CG5684, FBgn0036239). It is a prote... gi\|220954902, gi... - gi\|220954902\|gb\|ACL89994.1\| Pop2-PA [synthetic construct], gi\|220945074\|gb\|ACL85080.1\| Pop2-PA [synt...	430.0	[0..1]	[287..5]
gi\|125977180, gi... - gi\|54641371\|gb\|EAL30121.1\| GA19054-PA [Drosophila pseudoobscura], gi\|125977180\|ref\|XP_001352623.1\| G...	428.0	[0..1]	[289..2]
gi\|74204962 - gi\|74204962\|dbj\|BAE20968.1\| unnamed protein product [Mus musculus]	428.0	[0..8]	[294..2]
gi\|149742664, gi... - gi\|149742664\|ref\|XP_001488485.1\| PREDICTED: similar to CNOT7 protein isoform 1 [Equus caballus], gi\|... CCDS6000.2_1 - null CNOT7_CHICK - CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1 gi\|73979407 - gi\|73979407\|ref\|XP_540010.2\| PREDICTED: similar to CCR4-NOT transcription complex subunit 7 (CCR4-as... gi\|109085706, gi... - gi\|109085706\|ref\|XP_001095793.1\| PREDICTED: CCR4-NOT transcription complex, subunit 7 isoform 7 [Mac... gi\|114618908, gi... - gi\|114618908\|ref\|XP_001141414.1\| PREDICTED: hypothetical protein LOC464006 isoform 2 [Pan troglodyte... ENSCJAT00000022924 - null tr\|M3VV22\|M3VV22... - CCR4-NOT transcription complex subunit 7 OS=Felis catus GN=CNOT7 PE=4 SV=1 gi\|542149998\|ref... - PREDICTED: CCR4-NOT transcription complex subunit 7 [Zonotrichia albicollis] gi\|224049852 - gi\|224049852\|ref\|XP_002194151.1\| PREDICTED: CCR4-NOT transcription complex, subunit 7 [Taeniopygia g... CNOT7 - CCR4-NOT transcription complex, subunit 7 tr\|G3GZC4\|G3GZC4... - CCR4-NOT transcription complex subunit 7 OS=Cricetulus griseus GN=H671_1g2546 PE=4 SV=1 tr\|G1T7P8\|G1T7P8... - pep:novel scaffold:oryCun2:GL018717:2257628:2258485:-1 gene:ENSOCUG00000023781 transcript:ENSOCUT000...	427.0	[0..8]	[284..2]
gi\|33150534 - gi\|33150534\|gb\|AAP97145.1\|AF086915_1 CAF1 [Homo sapiens]	424.0	[0..8]	[284..2]
gi\|213627105, gi... - gi\|62857947\|ref\|NP_001016578.1\| CCR4-NOT transcription complex, subunit 8 [Xenopus (Silurana) tropic...	422.0	[0..8]	[297..2]
gi\|114594537 - gi\|114594537\|ref\|XP_001164866.1\| PREDICTED: similar to CCR4-NOT transcription complex, subunit 7 iso...	422.0	[0..8]	[284..2]

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Predicted Domain #1

Region A:
Residues: [1-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSNFSYPAL GVDGISSQIS PIRDVWSTNL QQEMNLIMSL IERYPVVSMD TEFPGVVARP  60
   61 LGVFKSSDDY HYQTLRANVD SLKIIQIGLA LSDEEGNAPV EACTWQFNFT FNLQDDMYAP 120
  121 ESIELLTKSG IDFKKHQEVG IEPADFAELL IGSGLVLQEE VTWITFHSGY DFAYLLKAMT 180
  181 QIPLPAEYEE FYKILCIYFP KNYDIKYIMK SVLNNSKGLQ DIADDLQIHR IGPQHQAGSD 240
  241 ALLTARIFFE IRSRYFDGSI DSRMLNQLYG LGSTGSVLWH NNSSTPQIQF RDLPGAHPSP 300
  301 TPSNAGIPTT LTNTSSAPNF ANSTFRFPPR VV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	132.0
Match:	2p51A
Description:	No description for 2p51A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits