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Protein Overview: SPCC965.04c

General Information:
Name(s) found: SPCC965.04c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • mitochondrial inner membrane i-AAA protease complex subunit Yme1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 709 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article]
    integral to membrane [IEA]
    mitochondrial inner membrane [ISSLink to PubMed article]
    Biological Process: misfolded or incompletely synthesized protein catabolic process [ISSLink to PubMed article]
    mitochondrion organization [ISSLink to PubMed article]
    Molecular Function: ATP binding [IEA]
    zinc ion binding [IEA]
    ATP-dependent peptidase activity [ISSLink to PubMed article]
    metalloendopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVLHPIFL FGKTSFLYSG CSKFGGRLFN NSIVHGWLRT RSYALASGLH PLRKQKLAHF  60
   61 EDLANANMSD PYMQAKLYKE LADNFPEAII SRYETQGVAR NSACDRYYQE ALRKKSWSRS 120
  121 LSNNISLSQS SSSPATSSFS DPKAFSAGVP KFTSDTSSTV SSTPSLNHSL QNSMPPSTPT 180
  181 PPPVWAPTIV SSALGTSSKT PVYVVVDEPR FTKFFRIFKF IAGLSVASYF VLLGMSIFAE 240
  241 TSGLNNIMTN TTEQEPMEER AINVRFSDVQ GVDEAKEELE EIVDFLRDPT HFTRLGGKLP 300
  301 RGVLLTGPPG TGKTMLARAV AGEANVPFFF MSGSQFDEMY VGVGAKRVRE LFAAARKQAP 360
  361 SIIFIDELDA IGQKRNARDA AHMRQTLNQL LVDLDGFSKN EDLAHPVVFI GATNFPESLD 420
  421 PALTRPGRFD RHIHVPLPDV RGRLAILLQH TRHVPLGKDV DLSIIARGTS GFAGADLANL 480
  481 INQAAVYASK NLSTAVSMRD LEWSKDRILM GAERKSAFIT PENKLMTAYH EGGHALVALF 540
  541 TKNAMRPYKA TIMPRGSSLG MTISLPDMDK DSWTREEYLA MLDVTMGGRA AEELLYGKDK 600
  601 ITSGAHNDID KATQVARRMV TEFGMSDRIG PVSLEAEMDN LSPATRALVE SEIKSLLEAS 660
  661 YERSLSLLKS HKKELDALAT ALVDYEFLTA EEMNRVVKGD RDLLRNKLS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..116] PSI-BLAST 6.045757 Crystal structure of N-terminal domain of E.Coli Lon Protease
    2 View Details [117..248] deduced N/A No confident structure predictions are available.
    3 View Details [249..517] PSI-BLAST 67.154902 AAA domain of cell division protein FtsH
    4 View Details [518..570] FFAS03 4.49 No description for 2di4A was found.
    5 View Details [571..709] PSI-BLAST 108.0 EDTA treated

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • hydrolase activity
    		•  2.32318595170495 bayes_pls_golite062009
  • binding
    		•  2.0681607836408 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.64692747234601 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.64482911944641 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.569910969126728 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.568840867400671 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.568779924702229 bayes_pls_golite062009
  • nucleotide binding
    		•  0.564275755355315 bayes_pls_golite062009
  • motor activity
    		•  0.50661339105747 bayes_pls_golite062009
  • protein binding
    		•  0.378225828131122 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.337450879590656 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.318452816722389 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.31055462644917 bayes_pls_golite062009
  • ATP binding
    		•  0.1860481660648 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.152859582615242 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.138615225841109 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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