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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPCC965.04c
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVLHPIFL FGKTSFLYSG CSKFGGRLFN NSIVHGWLRT RSYALASGLH PLRKQKLAHF  60
   61 EDLANANMSD PYMQAKLYKE LADNFPEAII SRYETQGVAR NSACDRYYQE ALRKKSWSRS 120
  121 LSNNISLSQS SSSPATSSFS DPKAFSAGVP KFTSDTSSTV SSTPSLNHSL QNSMPPSTPT 180
  181 PPPVWAPTIV SSALGTSSKT PVYVVVDEPR FTKFFRIFKF IAGLSVASYF VLLGMSIFAE 240
  241 TSGLNNIMTN TTEQEPMEER AINVRFSDVQ GVDEAKEELE EIVDFLRDPT HFTRLGGKLP 300
  301 RGVLLTGPPG TGKTMLARAV AGEANVPFFF MSGSQFDEMY VGVGAKRVRE LFAAARKQAP 360
  361 SIIFIDELDA IGQKRNARDA AHMRQTLNQL LVDLDGFSKN EDLAHPVVFI GATNFPESLD 420
  421 PALTRPGRFD RHIHVPLPDV RGRLAILLQH TRHVPLGKDV DLSIIARGTS GFAGADLANL 480
  481 INQAAVYASK NLSTAVSMRD LEWSKDRILM GAERKSAFIT PENKLMTAYH EGGHALVALF 540
  541 TKNAMRPYKA TIMPRGSSLG MTISLPDMDK DSWTREEYLA MLDVTMGGRA AEELLYGKDK 600
  601 ITSGAHNDID KATQVARRMV TEFGMSDRIG PVSLEAEMDN LSPATRALVE SEIKSLLEAS 660
  661 YERSLSLLKS HKKELDALAT ALVDYEFLTA EEMNRVVKGD RDLLRNKLS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle