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Protein Overview: cid12

General Information:
Name(s) found: cid12 / SPCC663.12 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • poly(A) polymerase Cid12 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 336 amino acids

    Gene Ontology:
    Cellular Component: nuclear RNA-directed RNA polymerase complex [IDALink to PubMed article]
    nucleus [IDALink to PubMed articleLink to PubMed article]
    spliceosomal complex [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    RNA-directed RNA polymerase complex [IDALink to PubMed article]
    Biological Process: mitotic cell cycle spindle assembly checkpoint [IGILink to PubMed article]
    DNA damage checkpoint [IGILink to PubMed article]
    chromatin silencing at centromere [IMPLink to PubMed article]
    sister chromatid biorientation [IMPLink to PubMed article]
    chromosome segregation [IMPLink to PubMed articleLink to PubMed article]
    RNA polyadenylation [ISSLink to PubMed article]
    chromatin silencing by small RNA [IGILink to PubMed article][IMPLink to PubMed article]
    attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation [IMPLink to PubMed article]
    Molecular Function: ATP binding [IEA]
    RNA binding [IEA]
    polynucleotide adenylyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVLLELHS VPWNEEGLSD NARLYSFLEF VSPKIEELKY RKLLLEKLQT HIREVVLDAE  60
   61 LQVYGSMYIG TTLSISDVDV SLKSPRVGEL EKRRVTMVLR KYLDADADFH SSARVPRINL 120
  121 VDVSGIGVDL TFGNDKACRT AELQKAYNEE HPIFGRLLML LKHWLFERDL ENVHHGGIAS 180
  181 CALSYMLIGW LEMRFHKKGI DSEVQPIRAL LQKFFYFWGV EWTYELFVLR PLTGQIVPKL 240
  241 QKGWLNEVQP NLLSIEDPID RNNDIGKQSF QISMIKAAFV ASANELLSDK TWFSTFAITE 300
  301 DEMFLCKQFE NVINTKRSLV EGYDSDTESD ELQAGG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..336] PSI-BLAST 55.0 Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleotidyltransferase activity
    		•  6.98311287327254 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  5.66611091580726 bayes_pls_golite062009
  • transferase activity
    		•  4.39508042323068 bayes_pls_golite062009
  • RNA binding
    		•  3.35578898341041 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.53528619920768 bayes_pls_golite062009
  • DNA binding
    		•  1.92558226050462 bayes_pls_golite062009
  • polynucleotide adenylyltransferase activity
    		•  1.54779952898232 bayes_pls_golite062009
  • binding
    		•  1.48092751553298 bayes_pls_golite062009
  • catalytic activity
    		•  0.75232920999699 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.374635535973312 bayes_pls_golite062009
  • transcription factor binding
    		•  0.303837517417996 bayes_pls_golite062009
  • protein binding
    		•  0.117945573723438 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle