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Protein Overview: SPAC22H12.05c

General Information:
Name(s) found: SPAC22H12.05c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • fasciclin domain protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 728 amino acids

    Gene Ontology:
    Cellular Component: fungal-type vacuole membrane [IDALink to PubMed article]
    integral to membrane [IEA]
    cell surface [RCALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLQFRLYLL FILLFISFAN GKNEYEDKST SIIDLLSSKS QFSKLIRRLQ RNRLVPYLNR  60
   61 NKGLTLFAPL NEAFPDDSIE PNLLYYIVNT TELDRSVLRT QLKSSDGQQI ALKIHYKAET 120
  121 GRAYDKVNNA QIVQSNWRAD SGVVQVIDNI IDLPPPALEI LSSEKDFSIF HRLSVAWVGE 180
  181 YSSVTMLVPD SSAFLNVYTN TELAYLYSMY AAEDVKTLIH QHILVNQRVY AEDVIEPKTF 240
  241 HYKNGISISM KFDKDQKKLF INDVSTTKYD LLTFSGAIHT VSSLINPEII SFTPAKYLIG 300
  301 IGAAWFSEKL SRERKSISVD KTSKRAILAP TNWAYREIID IDYHIIENFD LPAPNKYALY 360
  361 VTNIKSGNSV GEDTNALVRI ATGSAGEMYV NVETRSIQSE NIGNVSLYVL DKDIEPPQPL 420
  421 LSQLILVDEI SFSVRYLASL GLGDYTKVTW FLVKNSAWTQ LGLVHLVLQQ NLELLESVML 480
  481 DYAFEGIAFY GSSDEAWASG NYTTLSNKEF LIEGVYEDSN SRNKRDLLRI NNEIYEVQTR 540
  541 DLLVKDGVVH LVDKVKLPFS VSQKDMIIAG GRKEFLELLD KFEMLDMLDS GYPVVVPSLT 600
  601 GSDVNTKDSS FAERHIIDPE KRNFVISGSR LSVDSSPWIS IQDYGYSELG NVYFVQNAIP 660
  661 TKRQNRWRIT FISISGLLLS VGICVLCYKI YFKFFRNRFM NQGEREPLLA PADSDTMAGR 720
  721 RNSSSLSV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run spc19 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..152] FFAS03 5.36 Solution structure of the FAS1 domain of human transforming growth factor-beta induced protein IG-H3
    2 View Details [153..290] PSI-BLAST 32.154902 No description for 1w7dA was found.
    3 View Details [291..559] PSI-BLAST 31.154902 Fasciclin I
    4 View Details [560..728] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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