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Protein Overview: SPBC577.09

General Information:
Name(s) found: SPBC577.09 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • ERCC-8 homolog [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 404 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Ddb1-Ckn1 complex [IDALink to PubMed article]
    Biological Process: transcription-coupled nucleotide-excision repair [IMPLink to PubMed article]
    nucleotide-excision repair [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFLLAREW GQEPNSSFRR QLLQHRLQRL ALNPDVKIKR RHGAGILGSV NALSIDNTIH  60
   61 QLMVSGGANS SINVWDLQNI DQKEDEDLIL DTLNAVPART SHKFGITDLH WFPFDNGIFT 120
  121 SSSFDHTLKV WDVSTLQEAY TFTMEDMIYS HAWSPIASHC LIATAYRSSS IRLCDMQSGS 180
  181 YTHSLSGHTG NVLAVDWCPK NEFVLASGSA DGTCRLWDIR KVSSSFACMD LHNKYLPSNQ 240
  241 TNISHYGTVN GLAWTSDARY LASCGTDDRI RVWNMESGRN TLREFGPIIH NQTTSFAVHP 300
  301 CMIQPSMDSD VFVLFPNDDG SLALLNLLEG SFVRRLSTHS LKRINCAAYR PDFEQCFTGD 360
  361 MNGNIYMWSP KALKSPTKIS DLETRRNIIQ EVYDSLINIP VTYQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..404] PSI-BLAST 49.154902 Tup1, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  3.41911717374608 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  3.13054264433898 bayes_pls_golite062009
  • binding
    		•  2.42570478946173 bayes_pls_golite062009
  • protein binding
    		•  2.26925404328312 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  2.17819869145391 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.10348788067437 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.00420268007946 bayes_pls_golite062009
  • peroxisome targeting sequence binding
    		•  1.73465159850484 bayes_pls_golite062009
  • DNA binding
    		•  1.53482914288832 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  1.4866444894826 bayes_pls_golite062009
  • transcription activator activity
    		•  1.08907070428303 bayes_pls_golite062009
  • transcription factor activity
    		•  0.897833210520351 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.624053529462119 bayes_pls_golite062009
  • transcription factor binding
    		•  0.469377587704245 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.426429095658617 bayes_pls_golite062009
  • kinase activity
    		•  0.387572734234845 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.359536347486199 bayes_pls_golite062009
    		• 0.309947462700731 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.245000508226811 bayes_pls_golite062009
  • protein kinase activity
    		•  0.229242350006544 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.226335610368636 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.0676565515282608 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle