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Protein Overview: SPBC660.15

General Information:
Name(s) found: SPBC660.15 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • mRNA cleavage factor complex subunit [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 474 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    mRNA cleavage factor complex [ISSLink to PubMed article]
    Biological Process: mRNA polyadenylation [ISSLink to PubMed article]
    mRNA cleavage [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]
    mRNA 3'-UTR binding [NASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGSDFEDDE LFKDLYGEEN EKKVESASGN QETSNVTPTK ENEGYEELEK SGEAGAERTK  60
   61 ENPFREEPGA DFDRSGSDQQ YSAEAEANQE DDLNETSQQA PDPSSYDIRG QALSSATWDN 120
  121 AEDGENSKND NYNENQSALT GSGAMESNED NAEETSPFNR EDGKMFIGGL NWETTDDSLR 180
  181 DYFEQFGEVL DCTVMRDSTT GRSRGFGFLT FKNPKCVNEV MSKEHHLDGK IIDPKRAIPR 240
  241 EEQEKTAKMF VGGVPGDCTE EEFRNFFNQF GRVLDATLMM DKDTGRPRGF GFVTYENESA 300
  301 VEATMSQPYI TIHGKPVEVK RATPKASLRD SHDRHQHGYH GNANPYYAQN MNMYGGMTPA 360
  361 MMAQYYRQMQ QYMEAMRNMP AAAGAVPYPQ PVMPAGMADW QQQQQQGAAY FDPSKMNQGT 420
  421 GDGVPFSPSM PSGSSRGGYH GRNPGGPNRQ RYRGRRDGRG GNTGGGHSFH PYRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..65] PSI-BLAST 14.30103 CG8781 protein
    2 View Details [66..240] PSI-BLAST 30.154902 Hu antigen D (Hud)
    3 View Details [241..338] PSI-BLAST 35.09691 No description for 2cjkA was found.
    4 View Details [339..474] PSI-BLAST 5.221849 Sec24

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  5.15097136329571 bayes_pls_golite062009
  • mRNA binding
    		•  4.05281507540116 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.81920018903278 bayes_pls_golite062009
    		• 3.4479220904723 bayes_pls_golite062009
  • binding
    		•  3.05116833253954 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  1.46469774223879 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  1.36691748240059 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.07788694919471 bayes_pls_golite062009
  • DNA binding
    		•  0.978604858165557 bayes_pls_golite062009
  • snRNA binding
    		•  0.73428616955527 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • protein binding
    		•  0.42571879933058 bayes_pls_golite062009
  • transcription factor activity
    		•  0.234742017105535 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle