| Protein: | SPBC660.15 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 474 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC660.15.
| Description | E-value | Query Range |
Subject Range |
|
|
221.0 | [0..31] | [467..60] |
|
|
219.0 | [0..31] | [469..60] |
|
|
217.0 | [0..31] | [472..60] |
|
|
217.0 | [0..31] | [467..60] |
|
Region A: Residues: [1-65] |
1 11 21 31 41 51
| | | | | |
1 MGGSDFEDDE LFKDLYGEEN EKKVESASGN QETSNVTPTK ENEGYEELEK SGEAGAERTK 60
61 ENPFR
|
| Detection Method: |  |
| Confidence: | 14.30103 |
| Match: | 1hl6A |
| Description: | CG8781 protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [66-240] |
1 11 21 31 41 51
| | | | | |
1 EEPGADFDRS GSDQQYSAEA EANQEDDLNE TSQQAPDPSS YDIRGQALSS ATWDNAEDGE 60
61 NSKNDNYNEN QSALTGSGAM ESNEDNAEET SPFNREDGKM FIGGLNWETT DDSLRDYFEQ 120
121 FGEVLDCTVM RDSTTGRSRG FGFLTFKNPK CVNEVMSKEH HLDGKIIDPK RAIPR
|
| Detection Method: | |
| Confidence: | 30.154902 |
| Match: | 1fxlA |
| Description: | Hu antigen D (Hud) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| 3.4479220904723 | bayes_pls_golite062009 | |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.36691748240059 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| snRNA binding | 0.73428616955527 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [241-338] |
1 11 21 31 41 51
| | | | | |
1 EEQEKTAKMF VGGVPGDCTE EEFRNFFNQF GRVLDATLMM DKDTGRPRGF GFVTYENESA 60
61 VEATMSQPYI TIHGKPVEVK RATPKASLRD SHDRHQHG
|
| Detection Method: | |
| Confidence: | 35.09691 |
| Match: | 2cjkA |
| Description: | No description for 2cjkA was found. |
|
Region A: Residues: [339-474] |
1 11 21 31 41 51
| | | | | |
1 YHGNANPYYA QNMNMYGGMT PAMMAQYYRQ MQQYMEAMRN MPAAAGAVPY PQPVMPAGMA 60
61 DWQQQQQQGA AYFDPSKMNQ GTGDGVPFSP SMPSGSSRGG YHGRNPGGPN RQRYRGRRDG 120
121 RGGNTGGGHS FHPYRR
|
| Detection Method: | |
| Confidence: | 5.221849 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
