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Protein Overview: SPBC18E5.05c

General Information:
Name(s) found: SPBC18E5.05c [Sanger Pombe]
Description(s) found:
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  • pir||T39756 hypothetical protein SPBC18E5.05c - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582908|sp|O94495.1|ELP5_SCHPO RecName: Full=Elongator complex protein 5; AltName: Full=Protein iki1 [NCBI NR]
  • gi|4107324|emb|CAA22665.1| elongator complex subunit Iki1 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112643|ref|NP_595851.1| RNA polymerase II elongator complex subunit [Schizosaccharomyces pombe] [NCBI NR]
  • RNA polymerase II elongator complex subunit [Sanger Pombe]
  • Elongator complex protein 5 OS=Schizosaccharomyces pombe GN=iki1 PE=2 SV=1 [Swiss-Prot]
  • HYPOTHETICAL PROTEIN; SIMILAR TO S. CEREVISIAE YHR187W: O94495; [pompepVF.fasta]
  • Hypothetical protein [pompep4896]
  • |||hypothetical protein [pompepnew.fasta]
  • SPBC18E5.05c protein [4896.FASTAC]
  • |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • hypothetical protein; similar to yeast YHR187W [Schizosaccharomyces pombe]gi|4107324|emb|CAA22665.1| SPBC18E5.05c [Schizosaccharomyces pombe]gi|7491445|pir||T39756 hypothetical protein SPBC18E5.05c - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • (O94495) Hypothetical protein [pompep4896_normal_reversed]
  • |||elongator complex subunit Iki1 |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC18E5.05c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC18E5.05c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |iki1||elongator complex subunit Iki1 |Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Elongator complex protein 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=iki1 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 314 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Elongator holoenzyme complex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: tRNA modification [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFLLNRCI RDLSPLTVLK DNLQQTAKPI LNYYAKNAAS RGIKVLFISY ETLEKEAPEG  60
   61 IDCFLYATSW EKVKSLKELY EHISSWRTQG KQHIVMIDTI NPILNTSISS FTMFFGSVLA 120
  121 LGSICFLTSF HKDVTLENYP SYLPPCEVFL DFTSTCTVSL IGMQHLSVEH DAKMRSLPNP 180
  181 LLEELQDDKI ISLLGSNCET AIVLHVEFRK KSGRIIKESC VLKNGKLEPY TPFEETARGP 240
  241 EPADNQIDFN VSFNLNVSEK ERKERDKVFL PYFSAQMVGS QHKSSFVDEG TIIYHADEAD 300
  301 DFDEEEDADE DLLI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] MSA 1.017975 View MSA. No confident structure predictions are available.
    2 View Details [136..314] MSA 2.018972 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle