YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC18E5.05c
Organism:	Schizosaccharomyces pombe
Length:	314 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC18E5.05c.

Description	E-value	Query Range	Subject Range
gi\|28949946, gi\|... - gi\|32413024\|ref\|XP_326992.1\| hypothetical protein [Neurospora crassa], gi\|28949946\|emb\|CAD70932.1\| r... gi\|85100035 - gi\|85100035\|ref\|XP_960886.1\| hypothetical protein NCU06706 [Neurospora crassa OR74A]	373.0	[0..13]	[277..27]
gi\|46121697, gi\|... - gi\|46121697\|ref\|XP_385403.1\| hypothetical protein FG05227.1 [Gibberella zeae PH-1], gi\|42552620\|gb\|E...	355.0	[0..13]	[277..27]
ELP5_YEAST - Elongator complex protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IKI1 PE=1 SV... IKI1 - Subunit of Elongator complex, which is required for modification of wobble nucleosides in tRNA; iki1... gi\|151944131 - gi\|151944131\|gb\|EDN62424.1\| insensitive to killer toxin [Saccharomyces cerevisiae YJM789] gi\|207344506 - gi\|207344506\|gb\|EDZ71629.1\| YHR187Wp-like protein [Saccharomyces cerevisiae AWRI1631]	324.0	[0..4]	[279..10]
gi\|49099194, gi\|... - gi\|67540868\|ref\|XP_664208.1\| hypothetical protein AN6604.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	318.0	[0..12]	[276..26]
gi\|44983049, gi\|... - gi\|45188205\|ref\|NP_984428.1\| ADR332Wp [Ashbya gossypii ATCC 10895], gi\|44983049\|gb\|AAS52252.1\| ADR33... gi\|44983049 - gi\|44983049\|gb\|AAS52252.1\| ADR332Wp [Ashbya gossypii ATCC 10895]	315.0	[0..5]	[280..11]
gi\|38103608, gi\|... - gi\|39944072\|ref\|XP_361573.1\| hypothetical protein MG04047.4 [Magnaporthe grisea 70-15], gb\|EAA50288....	297.0	[0..46]	[277..4]
orf19.10191, orf... - orf19.2676 CGDID:CAL0003515 Assembly 19, Contig19-10158 (33162, 34058) CDS, translated using codon t... gi\|68470844, gi\|... - gi\|68471302\|ref\|XP_720199.1\| hypothetical protein CaO19.10191 [Candida albicans SC5314], gi\|68470844...	290.0	[0..5]	[276..11]
gi\|115386376, gi... - gi\|115386376\|ref\|XP_001209729.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	277.0	[0..12]	[276..26]
gi\|70984290, gi\|... - gi\|70984290\|ref\|XP_747661.1\| killer toxin sensitivity protein (Iki1) [Aspergillus fumigatus Af293], ...	272.0	[0..12]	[276..26]
gi\|90297960, gi\|... - gi\|90297960\|gb\|EAS27591.1\| hypothetical protein CIMG_10196 [Coccidioides immitis RS], gi\|119173453\|r...	249.0	[0..12]	[276..27]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFLLNRCI RDLSPLTVLK DNLQQTAKPI LNYYAKNAAS RGIKVLFISY ETLEKEAPEG  60
   61 IDCFLYATSW EKVKSLKELY EHISSWRTQG KQHIVMIDTI NPILNTSISS FTMFFGSVLA 120
  121 LGSICFLTSF HKDVT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [136-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LENYPSYLPP CEVFLDFTST CTVSLIGMQH LSVEHDAKMR SLPNPLLEEL QDDKIISLLG  60
   61 SNCETAIVLH VEFRKKSGRI IKESCVLKNG KLEPYTPFEE TARGPEPADN QIDFNVSFNL 120
  121 NVSEKERKER DKVFLPYFSA QMVGSQHKSS FVDEGTIIYH ADEADDFDEE EDADEDLLI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits