YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPAC1B3.05

General Information:
Name(s) found: SPAC1B3.05 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
SHOW ALL
  • CCR4-Not complex subunit Not3/5 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 630 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    CCR4-NOT core complex [ISSLink to PubMed article]
    Biological Process: RNA elongation [ICLink to PubMed article]
    mRNA catabolic process [ICLink to PubMed article]
    nuclear-transcribed mRNA poly(A) tail shortening [ISSLink to PubMed article]
    regulation of transcription from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: transcription regulator activity [ICLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAFYLHLEK IAIFDEVYEK LSASNSVSQK EKLEGDLKTQ IKKLQRLRDQ IKTWASSNDI  60
   61 KDKKALLENR RLIEAKMEEF KAVEREMKIK AFSKEGLSIA SKLDPKEKEK QDTIQWISNA 120
  121 VEELERQAEL IEAEAESLKA TFKRGKKDLS KLSHLSELES RIERHKWHQD KLELIMRRLE 180
  181 NSQISPEAVN DIQEDIMYYV ECSQSEDFAE DENLYDELNL DEASASYDAE RSGRSSSSSH 240
  241 SPSPSASSSS SSENLLQDKA EAEEKVSADA SVQDIAEKES LDADKELATN DQEDDEEENQ 300
  301 AETQKDGAIS NNENMQSEVQ TTNPSASTSA VTNITKPTLI QNPSTPLSVS NSKVASPETP 360
  361 NATHTAPKVE MRYASAAAAA AAALAKESPS HHYIMQQVRP ETPNSPRLNS TVIQSKWDSL 420
  421 GHTASPKMQT QPVRSVSQSS ATTETNVKPT KEENADVPVS SPDYLKDLVN ALNTSKEQHK 480
  481 GAIDKEKLTE ALNISCVYVP DATDAAKPQY YIPKDPYPVP HYYPQQPLPL FDSSEMTELV 540
  541 DPDTLFYMFY YRPGTYQQYI AGQELKKQSW RFHKKYTTWF QRHEEPKMIT DEFESGSYRY 600
  601 FDFEGDWVQR KKADFRFTYQ YLEDDDDWTR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..392] FFAS03 1.46 Fibrinogen
    2 View Details [393..488] FFAS03 1.33 THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA
    3 View Details [489..630] Pfam 63.657577 No description for PF04153.9 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle