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Protein Overview: sol1

General Information:
Name(s) found: sol1 / SPBC30B4.04c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • SWI/SNF complex subunit Sol1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 865 amino acids

    Gene Ontology:
    Cellular Component: SWI/SNF complex [IDALink to PubMed articleLink to PubMed article]
    nucleus [IDALink to PubMed article]
    nuclear chromatin [ICLink to PubMed article]
    spindle pole body [IDALink to PubMed article]
    Biological Process: chromatin remodeling [ISSLink to PubMed article]
    regulation of transcription from RNA polymerase II promoter [IDALink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    general RNA polymerase II transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNQGFVPAS DYPTAVSYPT QGQSYNTQEE QPAYPQRFST SQGMYAAEYG NANMMNTSEN  60
   61 EPNNLAHSQP FRQSPSTQRN LPNQSFDFAS NGAWNGSGSV KYSSPMMPSS RIPFQQEKEA 120
  121 AMQQQQQQQQ QQQLYQRQMQ SREALLSQQI PPNQIGINAH PAVRQTPQPA PSPNTPSGNA 180
  181 NQLTPAYAAS FDKFMVSLIS FMEKRGTPIK SYPQINNTPI NLMMLYALVM RAGGSRQVSA 240
  241 HNFWPKISAS LGFPSPDAIS LLIQYYNSYL LPYEEAWLAA QQQQKSLQQA KANHSANVQS 300
  301 RPKNYPQKPV QTTPEAVHAN GSMHGSLHSK SPSPAFTANR FSPAAPTTVS SERNAPPYPS 360
  361 APTRPTPPTV QTSSSAAPVD SAEPVAYQPI KKPIDPMLGY PLNVAATYRL DESLLRLQMP 420
  421 SIVDLGTVNI QALCMSLQST LEKEITYAMN VLLILTNDQK WMFPLSECQD VVDALIDVAT 480
  481 QCLDNLLSVL PNEDLMEIAD KRPSYRQLLY NCCVEISQFS REDFSNSLSE NKTKDSINAI 540
  541 DVHNSEQNLL AVFVIFRNLS HFEANQNVLV QNPDFFPLLI RVVKSLNFHA TSLLRSSRNT 600
  601 LDLHKDVLIV LCQLSQNFIL PNVDVARHVL LFILSFSPFN RKKSKTILND TLPTSIPSYT 660
  661 PATHPYAGPA INAYAKLLAK DANNKTNFQA IFDNNPKFLD SLFLLLASVV PKFNRHCLKI 720
  721 CERRLPLLQQ SFFCLAATVS YVKQSEQAAN WCNIGEGFFV SMLRLLILLS GHPSLNPPSR 780
  781 VASQYPTTNP FRYVIQSGIS TVRRLLSLVE AGNISLSSFP KSETLLAVLL APTTETSFLK 840
  841 EISNLLDRTG DSDASLENTD DKSGI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..207] PSI-BLAST 6.154902 Sec24
    2 View Details [208..338] PSI-BLAST 19.0 DNA-binding domain from the dead ringer protein
    3 View Details [339..417] deduced N/A No confident structure predictions are available.
    4 View Details [418..637] deduced N/A No confident structure predictions are available.
    5 View Details [638..865] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  4.55411292098115 bayes_pls_golite062009
  • DNA binding
    		•  4.42692928312159 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.31553768044343 bayes_pls_golite062009
  • binding
    		•  2.97217702905299 bayes_pls_golite062009
  • transcription factor activity
    		•  2.58593134374376 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  2.32480271621458 bayes_pls_golite062009
  • transcription activator activity
    		•  2.19377524406907 bayes_pls_golite062009
  • transcription coactivator activity
    		•  2.08578967307608 bayes_pls_golite062009
  • transcription factor binding
    		•  1.28734696305262 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.17489559520071 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.13378621684772 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.06026105710513 bayes_pls_golite062009
  • protein binding
    		•  0.716418857716373 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle