| Protein: | sol1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 865 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sol1.
| Description | E-value | Query Range |
Subject Range |
|
|
531.0 | [0..3] | [843..91] |
|
|
498.0 | [0..27] | [854..26] |
|
|
457.0 | [0..2] | [843..93] |
|
|
449.0 | [0..2] | [843..93] |
|
|
433.0 | [0..2] | [843..92] |
|
|
427.0 | [0..2] | [835..100] |
|
|
391.0 | [0..3] | [822..71] |
|
|
321.0 | [0..503] | [847..506] |
|
|
311.0 | [0..7] | [510..306] |
|
|
291.0 | [0..2] | [749..93] |
|
Region A: Residues: [1-207] |
1 11 21 31 41 51
| | | | | |
1 MNNQGFVPAS DYPTAVSYPT QGQSYNTQEE QPAYPQRFST SQGMYAAEYG NANMMNTSEN 60
61 EPNNLAHSQP FRQSPSTQRN LPNQSFDFAS NGAWNGSGSV KYSSPMMPSS RIPFQQEKEA 120
121 AMQQQQQQQQ QQQLYQRQMQ SREALLSQQI PPNQIGINAH PAVRQTPQPA PSPNTPSGNA 180
181 NQLTPAYAAS FDKFMVSLIS FMEKRGT
|
| Detection Method: |  |
| Confidence: | 6.154902 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [208-338] |
1 11 21 31 41 51
| | | | | |
1 PIKSYPQINN TPINLMMLYA LVMRAGGSRQ VSAHNFWPKI SASLGFPSPD AISLLIQYYN 60
61 SYLLPYEEAW LAAQQQQKSL QQAKANHSAN VQSRPKNYPQ KPVQTTPEAV HANGSMHGSL 120
121 HSKSPSPAFT A
|
| Detection Method: | |
| Confidence: | 19.0 |
| Match: | 1kqqA |
| Description: | DNA-binding domain from the dead ringer protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.55411292098115 | bayes_pls_golite062009 |
| DNA binding | 4.42692928312159 | bayes_pls_golite062009 |
| nucleic acid binding | 4.31553768044343 | bayes_pls_golite062009 |
| binding | 2.97217702905299 | bayes_pls_golite062009 |
| transcription factor activity | 2.58593134374376 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.32480271621458 | bayes_pls_golite062009 |
| transcription activator activity | 2.19377524406907 | bayes_pls_golite062009 |
| transcription coactivator activity | 2.08578967307608 | bayes_pls_golite062009 |
| transcription factor binding | 1.28734696305262 | bayes_pls_golite062009 |
| transcription repressor activity | 1.17489559520071 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.13378621684772 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.06026105710513 | bayes_pls_golite062009 |
| protein binding | 0.716418857716373 | bayes_pls_golite062009 |
|
Region A: Residues: [339-417] |
1 11 21 31 41 51
| | | | | |
1 NRFSPAAPTT VSSERNAPPY PSAPTRPTPP TVQTSSSAAP VDSAEPVAYQ PIKKPIDPML 60
61 GYPLNVAATY RLDESLLRL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [418-637] |
1 11 21 31 41 51
| | | | | |
1 QMPSIVDLGT VNIQALCMSL QSTLEKEITY AMNVLLILTN DQKWMFPLSE CQDVVDALID 60
61 VATQCLDNLL SVLPNEDLME IADKRPSYRQ LLYNCCVEIS QFSREDFSNS LSENKTKDSI 120
121 NAIDVHNSEQ NLLAVFVIFR NLSHFEANQN VLVQNPDFFP LLIRVVKSLN FHATSLLRSS 180
181 RNTLDLHKDV LIVLCQLSQN FILPNVDVAR HVLLFILSFS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [638-865] |
1 11 21 31 41 51
| | | | | |
1 PFNRKKSKTI LNDTLPTSIP SYTPATHPYA GPAINAYAKL LAKDANNKTN FQAIFDNNPK 60
61 FLDSLFLLLA SVVPKFNRHC LKICERRLPL LQQSFFCLAA TVSYVKQSEQ AANWCNIGEG 120
121 FFVSMLRLLI LLSGHPSLNP PSRVASQYPT TNPFRYVIQS GISTVRRLLS LVEAGNISLS 180
181 SFPKSETLLA VLLAPTTETS FLKEISNLLD RTGDSDASLE NTDDKSGI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
