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Protein Overview: SPAC6G9.14

General Information:
Name(s) found: SPAC6G9.14 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • RNA-binding protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 681 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [ISSLink to PubMed article]
    Molecular Function: mRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQSSKSHP SFMSTEYSLP VFSSQYSDIE NKDVLKSNSW DPYAANAPIA LSEIPSSSKS  60
   61 GKTNGSKAAV ESGLASGAFG NRTGNMNRNT SMSGYTFGSS NFVPYNLLSN TPSFTTSHSS 120
  121 STTFVPPATM GGGLNNLSSP SSSLYLPGSA SYQRSNSKNS SASILQMNTT LDDIPILLRR 180
  181 PGLSSYTPGP STSRRSISSS SNLGGNPGLI ANNPSASKNF AFTSGSSSTN NSTTSSSSMA 240
  241 NGLQSISKHS AAFPLLSNAT SFFGENLTPS LAASTASTGS TDSSGSNIAN TLIAPTPTIS 300
  301 PPSANTVGNP SPADTPGFNV PSLISDDPSV SSSLSSSVAS LSLQNSNILS FCKDQHGCRY 360
  361 LQRLLEKKNQ SHIDAVFAET HPYLAVLMVD AFGNYLCQKL FEHASEAQRS TFIQIIAPKL 420
  421 VPISFNMHGT RALQKIIDLV SSPDQISCIV NALRPNVVLL TKDLNGNHVI QKCLNKFSQE 480
  481 DCQFIFDAIC EDPLDVSTHR HGCCVVQRCF DHASPAQIEQ LVEHIVPHAL TLVQDAFGNY 540
  541 VLQYVLELNN PNHTEAIISY FLYKVRALST QKFSSNVMEK CIFFAPAAIK EKLISELMDE 600
  601 KHLPKLLRDS FANYVIQTAL DNASVKQRAE LVERIKPLIP SIKNTPCGRR ILSKLERRHP 660
  661 SSKEKPIVYS NSERVNTSSS A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..116] MSA 3.416996 View MSA. No confident structure predictions are available.
    2 View Details [117..254] MSA 3.467997 View MSA. No confident structure predictions are available.
    3 View Details [255..335] deduced N/A No confident structure predictions are available.
    4 View Details [336..681] PSI-BLAST 135.0 Pumilio 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • RNA binding
    		•  2.11573661150436 bayes_pls_golite062009
  • binding
    		•  1.83406697369076 bayes_pls_golite062009
  • protein binding
    		•  1.04044934052933 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.967597910409065 bayes_pls_golite062009
  • mRNA binding
    		•  0.73831124805124 bayes_pls_golite062009
  • hydrolase activity
    		•  0.0579816100130538 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.022274123463527 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle