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Protein Overview: SPAC12B10.08c

General Information:
Name(s) found: SPAC12B10.08c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • mitochondrial tRNA(Ile)-lysidine synthetase family [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 456 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article]
    Biological Process: tRNA modification [ISS]
    translation [IEA]
    Molecular Function: ATP binding [ISSLink to PubMed article]
    tRNA(Ile)-lysidine synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTIKLKEFY NSLVSIRRRV GHRRLGIAVS GGVDSMLLSW FMKESQIMFG WPNQFIAFVV  60
   61 DHRIRKNSTE EALQTIWNLN RMLIPNVYLN INWGNDDVHS LTNLETIARE HRYQVLTRAC 120
  121 ITHNIRHICT AHHANDQAET IFMRLLRRKP GTWGGLCAMK PVSQIPESDS ICGASNIELL 180
  181 RPLLPYYKNQ ILNTAKQHGI AWEEDPTNAD INLTPRNAIR RFLNQHAALT VEATKLATAF 240
  241 QSLQVNIDNK VDEILKDNIV SYHQPSGTLS LCFSKNELKK HSNLTKEELL LRCLTLTTSC 300
  301 RQIKRSSVVS LCNSVFDGKK LTIAKCLLTS SSIKDDTKLQ LQISRQPFSK AELKKKTITI 360
  361 NPDRYVLWDH RFWIKYSCKN TQTTLILRPL LSKDLNSLKG FLSKEEFLKF CIQVPGHIRF 420
  421 TIPVLSEEND KLVGIPTFGF NFRSDIISNC LHKFKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..456] PSI-BLAST 67.221849 Putative cell cycle protein MesJ, N-terminal domain; Putative cell cycle protein MesJ, middle and C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming carbon-oxygen bonds
    		•  5.31600041149223 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  5.31600041149223 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  5.31492510480447 bayes_pls_golite062009
  • phenylalanine-tRNA ligase activity
    		•  4.77782949872067 bayes_pls_golite062009
  • ligase activity
    		•  3.71561290487771 bayes_pls_golite062009
  • catalytic activity
    		•  0.828867994386867 bayes_pls_golite062009
  • DNA binding
    		•  0.402138468358303 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.370713117053127 bayes_pls_golite062009
  • binding
    		•  0.322762376257808 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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