YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC12B10.08c
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTIKLKEFY NSLVSIRRRV GHRRLGIAVS GGVDSMLLSW FMKESQIMFG WPNQFIAFVV  60
   61 DHRIRKNSTE EALQTIWNLN RMLIPNVYLN INWGNDDVHS LTNLETIARE HRYQVLTRAC 120
  121 ITHNIRHICT AHHANDQAET IFMRLLRRKP GTWGGLCAMK PVSQIPESDS ICGASNIELL 180
  181 RPLLPYYKNQ ILNTAKQHGI AWEEDPTNAD INLTPRNAIR RFLNQHAALT VEATKLATAF 240
  241 QSLQVNIDNK VDEILKDNIV SYHQPSGTLS LCFSKNELKK HSNLTKEELL LRCLTLTTSC 300
  301 RQIKRSSVVS LCNSVFDGKK LTIAKCLLTS SSIKDDTKLQ LQISRQPFSK AELKKKTITI 360
  361 NPDRYVLWDH RFWIKYSCKN TQTTLILRPL LSKDLNSLKG FLSKEEFLKF CIQVPGHIRF 420
  421 TIPVLSEEND KLVGIPTFGF NFRSDIISNC LHKFKL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	42	0.80
Non-Cytoplasmic	43	456	0.99