YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: set3

General Information:
Name(s) found: set3 / SPAC22E12.11c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
SHOW ALL
  • histone lysine methyltransferase Set3 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 859 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Rpd3L-Expanded complex [IDALink to PubMed article]
    Set3 complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [IPILink to PubMed article]
    histone methylation [ICLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    histone-lysine N-methyltransferase activity [TASLink to PubMed article]
    small conjugating protein ligase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKIRCVCPF EDDDGFTIQC ESCEVWQHAV CVNIDANNVP EKYFCEQCQP RPIDADKAHK  60
   61 IQLARLQREE EQSRILSRSR SSNNKRRTSF GKNGASPTHS ASPRQGNNTG ANGALFSQST 120
  121 NSSNSGSYRN SVTGATLPNA HAPHSQNRRR RSNHLNNPPE APITEASNEY VYSFHLEYVP 180
  181 LESNTFSASA LEYSKNLDLK NLDESEVLMD GCQVVPISSS KFCCSRFGLV STCEIPPNTP 240
  241 IMEVKGRVCT QNEYKSDPKN QYNILGAPKP HVFFDSNSQL VVDSRVAGSK ARFARKGCQS 300
  301 NSVVSSVYMN GSNSVPRFIL YSTTHIAPET EIIGDWTLDI SHPFRQFAPG MSRPSFNMEE 360
  361 LELLSEVLST FLSFNECASQ DKKNCVFSRV TKYIKAARRA STANRVSVAK DRLSLTPSST 420
  421 PSTPSPAESL PQPSNPTSVY AKSLKEFWLD KYRLSILQKW PAVKSLPTES VGIDVVMEPK 480
  481 LQPSVKEKKP TKDLQSPLPS VEEDSSNRDK KTDIADLHTD SKVGIADVLS PISPDAALQS 540
  541 DGPLKKAKEP EESSITPTTP PSFNVGESLS RRSASPLQHP RTSPDMLDKT SPCKRGLGTI 600
  601 TTVHKKHGSV DHLPSVKRRR SIANDFHGKP DYNKRSLSIE RKPEAFKTKG DRPHKVHPSF 660
  661 HRNSDSKLKL EPSSKEKSGS MFFNTLRTVK DKSHVHDTQR SSDVNFSRQN GTRSHSPSVS 720
  721 PVGFSFDKSP VTTPPLPTAP APVITSRHAL VNNQFPTNNP NILDHKANNG DDISNALNTS 780
  781 RSENKPNSNL VQGSVVKPSN TSASALPTSA PKKLSLSEYR QRRQQNILHQ QSKDNQAHGD 840
  841 TARPHTVPAA TVSNPSFTR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..77] PSI-BLAST 14.522879 Solution structure of PHD domain in death inducer-obliterator 1(DIO-1)
    2 View Details [78..356] PSI-BLAST 57.045757 No description for 2igqA was found.
    3 View Details [357..531] deduced N/A No confident structure predictions are available.
    4 View Details [532..717] MSA 1.232997 View MSA. No confident structure predictions are available.
    5 View Details [718..859] MSA 3.228994 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein deacetylase activity
    		•  4.57883938223258 bayes_pls_golite062009
  • histone deacetylase activity
    		•  4.49333137949283 bayes_pls_golite062009
  • methylated histone residue binding
    		•  4.19057851212315 bayes_pls_golite062009
  • deacetylase activity
    		•  3.63389424240028 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  3.20023500652896 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  3.20023500652896 bayes_pls_golite062009
  • histone binding
    		•  3.01402804224903 bayes_pls_golite062009
  • binding
    		•  2.78627791259335 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
    		•  2.32449645578286 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  2.02130427551376 bayes_pls_golite062009
  • nucleosome binding
    		•  1.69494047037058 bayes_pls_golite062009
  • protein binding
    		•  1.6308789519356 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  1.49667541832007 bayes_pls_golite062009
    		• 1.38236406424542 bayes_pls_golite062009
  • lysine N-methyltransferase activity
    		•  1.3339105639569 bayes_pls_golite062009
  • protein-lysine N-methyltransferase activity
    		•  1.3339105639569 bayes_pls_golite062009
  • histone-lysine N-methyltransferase activity
    		•  1.3339105639569 bayes_pls_golite062009
  • histone methyltransferase activity (H3-K4 specific)
    		•  1.2339461840955 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  1.19037129579681 bayes_pls_golite062009
  • chromatin binding
    		•  1.0360039180364 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.01735624308761 bayes_pls_golite062009
  • DNA binding
    		•  0.896491359501813 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  0.873079221910902 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.723245820583374 bayes_pls_golite062009
  • protein kinase activity
    		•  0.405766438875014 bayes_pls_golite062009
  • acetyltransferase activity
    		•  0.39905022319963 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.327424740985033 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.14235705491362 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.137650352572163 bayes_pls_golite062009
    		• 0.0927457062201698 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.0901653273812402 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  0.0710710324092494 bayes_pls_golite062009
  • histone acetyl-lysine binding
    		•  0.0410393640547611 bayes_pls_golite062009
  • kinase activity
    		•  0.00387875923819597 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle