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Protein Overview: dpb3

General Information:
Name(s) found: dpb3 / SPAC17G8.03c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • DNA polymerase epsilon subunit Dpb3 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 199 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    DNA replication preinitiation complex [IC]
    nuclear replication fork [ICLink to PubMed article]
    cytosol [IDALink to PubMed article]
    chromatin [RCALink to PubMed article]
    epsilon DNA polymerase complex [IPILink to PubMed article]
    Biological Process: DNA-dependent DNA replication [IMPLink to PubMed article]
    cellular protein localization [IGILink to PubMed article]
    Molecular Function: DNA binding [IEA]
    DNA-directed DNA polymerase activity [TASLink to PubMed article]
    protein binding [IPILink to PubMed article]
    sequence-specific DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDPTNNNDS ETKPNPATYW KSRFPVARIK KIMQADQDVG KVAQVTPVIM SKALELFMQS  60
   61 IIQESCKQTR LHQAKRVTVS HLKHAVQSVE QFDFLQDIVE KVPDAPPIKA ERKTKRPRAR 120
  121 RAANEGEHNE SVPAKKVKKN TVKEEEIEKD DESATTETPV KEEPTGEETE ADHEEKASVD 180
  181 HGNFSDKTTS EASSASGDE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..129] PSI-BLAST 32.69897 Histone H2A
    2 View Details [130..199] PSI-BLAST 7.39794 Crystal structure of the macro-domain of human core histone variant macroH2A1.2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed DNA polymerase activity
    		•  7.30463919195401 bayes_pls_golite062009
  • DNA polymerase activity
    		•  7.25909396656216 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  4.91761894051618 bayes_pls_golite062009
  • DNA binding
    		•  3.33590750206299 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.33150991098513 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.74104602193943 bayes_pls_golite062009
  • binding
    		•  2.68226682911828 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  2.18081531032351 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.71814239259767 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.71244156762178 bayes_pls_golite062009
  • transferase activity
    		•  1.4922191078713 bayes_pls_golite062009
  • protein binding
    		•  1.47714270074552 bayes_pls_golite062009
  • transcription factor activity
    		•  1.43258372806556 bayes_pls_golite062009
  • transcription activator activity
    		•  0.56890094816403 bayes_pls_golite062009
  • transcription factor binding
    		•  0.48055497002898 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.36684586697198 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.0502944474168801 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle