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Protein Overview: SPAC6C3.08

General Information:
Name(s) found: SPAC6C3.08 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • gankyrin [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 234 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    proteasome regulatory particle [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: proteasomal ubiquitin-dependent protein catabolic process [NASLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYASLGKAI EENCPEEYVE QAIQNDPNSL NAVDDDKRTP LHWACSVGKV NTIYFLLKQP  60
   61 NIKPDEKDEA GWTPLMISIN NRSVPDNVIE ELINRSDVDP TITTRGGQTC LHYAAGKGRL 120
  121 SIVQLLCDKA PELIRKKDLQ GQTPLHRAAA VGKIQVVKYL ISQRAPLNTS DSYGFTPLHF 180
  181 ALAEGHPDVG VELVRAGADT LRKDSENHTA LEVCPDRIVC NEFLEACKEQ NLEI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..234] PSI-BLAST 53.0 Ankyrin-R

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity
    		•  2.43232200709693 bayes_pls_golite062009
  • binding
    		•  2.41068257517762 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.93050618316228 bayes_pls_golite062009
  • protein binding
    		•  1.54890102798695 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  1.29094941611102 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  1.23556500721571 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  1.13900029077952 bayes_pls_golite062009
  • structural molecule activity
    		•  0.808967137205604 bayes_pls_golite062009
  • enzyme binding
    		•  0.60140077251711 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.327689573161126 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.280340492381105 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.247967126091535 bayes_pls_golite062009
  • actin binding
    		•  0.168912685840912 bayes_pls_golite062009
  • cyclin-dependent protein kinase regulator activity
    		•  0.0462605323512499 bayes_pls_golite062009
  • DNA binding
    		•  0.0016834194928852 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle