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Protein Overview: gi|18275791, gi|...

General Information:
Name(s) found: gi|19114134 [NCBI NR]
gi|18275791 [NCBI NR]
Description(s) found:
Found 6 descriptions.
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  • ref|NP_593222.1| putative v-snare binding protein; UBA domain; N terminal exon may be incorrect [Schizosaccharomyces pombe] [NCBI NR]
  • gi|18275791|sp|Q10255.2|YD27_SCHPO RecName: Full=Uncharacterized protein C56F8.07 [NCBI NR]
    • Organism: Schizosaccharomyces pombe
    Length: 507 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum membrane [IC]
    integral to membrane [IEA]
    endoplasmic reticulum [IDALink to PubMed article]
    intrinsic to endoplasmic reticulum membrane [RCALink to PubMed article]
    Biological Process: proteolysis [IEA]
    Molecular Function: aspartic-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVVSLRRIY SSEIYKLPTT RLHMDTLYYY YFVSHLAAAL FVDLPITEWL GGSLSCLSGL  60
   61 RRFYLSTYED PILLIPAPWK TALFSSELFF QVPFFIWVSL RLRKKARDPV LWVAILIYGV 120
  121 HAFTTTWCCM FELFAEKKWM IMSFYFPYLA IPLWMAIDMG GRLVKSCHAA KSGPSSTITS 180
  181 KKNIRQTILA TPFLLNRIRT EFPQLAAVLN DPNAFATTWQ SINASQLLQI PSSTYSMGMP 240
  241 SFSEDDLFDV EVQRRIEEQI RQNAVTENMQ SAIENHPEVF GQVYMLFVNV EINGHKVKAF 300
  301 VDSGAQATIL SADCAEKCGL TRLLDTRFQG VAKGVGMAKI LGCVHSAPLK IGDLYLPCRF 360
  361 TVIEGRDVDM LLGLDMLRRY QACIDLENNV LRIHGKEIPF LGESEIPKLL ANVEPSANAH 420
  421 GLGIEPASKA SASSPNPQSG TRLGTKESVA PNNEGSSNPP SLVNPPTDPG LNSKIAQLVS 480
  481 MGFDPLEAAQ ALDAANGDLD VAASFLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..176] MSA 29.123987 View MSA. No confident structure predictions are available.
    2 View Details [177..258] PSI-BLAST 3.30103 HIV nucleocapsid
    3 View Details [259..415] FFAS03 6.99 No description for 2i1aA was found.
    4 View Details [416..507] PSI-BLAST 6.154902 Structure of the DNA repair protein hHR23a

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • small conjugating protein binding
    		•  3.15592464706587 bayes_pls_golite062009
  • ubiquitin binding
    		•  3.08647023955532 bayes_pls_golite062009
  • binding
    		•  1.97462588597633 bayes_pls_golite062009
  • protein binding
    		•  1.07513578953037 bayes_pls_golite062009
  • hydrolase activity
    		•  0.550659928530472 bayes_pls_golite062009
  • catalytic activity
    		•  0.25774924710417 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.22198462684338 bayes_pls_golite062009
  • kinase binding
    		•  0.15385459309368 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0208336026248763 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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