| Protein: | gi|18275791, gi|... |
| Organism: | Schizosaccharomyces pombe |
| Length: | 507 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18275791, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
266.0 | [0..133] | [505..237] |
|
Region A: Residues: [1-176] |
1 11 21 31 41 51
| | | | | |
1 MKVVSLRRIY SSEIYKLPTT RLHMDTLYYY YFVSHLAAAL FVDLPITEWL GGSLSCLSGL 60
61 RRFYLSTYED PILLIPAPWK TALFSSELFF QVPFFIWVSL RLRKKARDPV LWVAILIYGV 120
121 HAFTTTWCCM FELFAEKKWM IMSFYFPYLA IPLWMAIDMG GRLVKSCHAA KSGPSS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [177-258] |
1 11 21 31 41 51
| | | | | |
1 TITSKKNIRQ TILATPFLLN RIRTEFPQLA AVLNDPNAFA TTWQSINASQ LLQIPSSTYS 60
61 MGMPSFSEDD LFDVEVQRRI EE
|
| Detection Method: | |
| Confidence: | 3.30103 |
| Match: | 1a1tA |
| Description: | HIV nucleocapsid |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [259-415] |
1 11 21 31 41 51
| | | | | |
1 QIRQNAVTEN MQSAIENHPE VFGQVYMLFV NVEINGHKVK AFVDSGAQAT ILSADCAEKC 60
61 GLTRLLDTRF QGVAKGVGMA KILGCVHSAP LKIGDLYLPC RFTVIEGRDV DMLLGLDMLR 120
121 RYQACIDLEN NVLRIHGKEI PFLGESEIPK LLANVEP
|
| Detection Method: | |
| Confidence: | 6.99 |
| Match: | 2i1aA |
| Description: | No description for 2i1aA was found. |
|
Region A: Residues: [416-507] |
1 11 21 31 41 51
| | | | | |
1 SANAHGLGIE PASKASASSP NPQSGTRLGT KESVAPNNEG SSNPPSLVNP PTDPGLNSKI 60
61 AQLVSMGFDP LEAAQALDAA NGDLDVAASF LL
|
| Detection Method: | |
| Confidence: | 6.154902 |
| Match: | 1oqyA |
| Description: | Structure of the DNA repair protein hHR23a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| small conjugating protein binding | 3.15592464706587 | bayes_pls_golite062009 |
| ubiquitin binding | 3.08647023955532 | bayes_pls_golite062009 |
| binding | 1.97462588597633 | bayes_pls_golite062009 |
| protein binding | 1.07513578953037 | bayes_pls_golite062009 |
| hydrolase activity | 0.550659928530472 | bayes_pls_golite062009 |
| catalytic activity | 0.25774924710417 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 0.22198462684338 | bayes_pls_golite062009 |
| kinase binding | 0.15385459309368 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0208336026248763 | bayes_pls_golite062009 |
