YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18275791, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVVSLRRIY SSEIYKLPTT RLHMDTLYYY YFVSHLAAAL FVDLPITEWL GGSLSCLSGL  60
   61 RRFYLSTYED PILLIPAPWK TALFSSELFF QVPFFIWVSL RLRKKARDPV LWVAILIYGV 120
  121 HAFTTTWCCM FELFAEKKWM IMSFYFPYLA IPLWMAIDMG GRLVKSCHAA KSGPSSTITS 180
  181 KKNIRQTILA TPFLLNRIRT EFPQLAAVLN DPNAFATTWQ SINASQLLQI PSSTYSMGMP 240
  241 SFSEDDLFDV EVQRRIEEQI RQNAVTENMQ SAIENHPEVF GQVYMLFVNV EINGHKVKAF 300
  301 VDSGAQATIL SADCAEKCGL TRLLDTRFQG VAKGVGMAKI LGCVHSAPLK IGDLYLPCRF 360
  361 TVIEGRDVDM LLGLDMLRRY QACIDLENNV LRIHGKEIPF LGESEIPKLL ANVEPSANAH 420
  421 GLGIEPASKA SASSPNPQSG TRLGTKESVA PNNEGSSNPP SLVNPPTDPG LNSKIAQLVS 480
  481 MGFDPLEAAQ ALDAANGDLD VAASFLL

Type	Start	End	Confidence
Cytoplasmic	1	26	0.91
Transmembrane Helix	27	47	0.85
Non-Cytoplasmic	48	80	0.85
Transmembrane Helix	81	100	0.88
Cytoplasmic	101	109	0.88
Transmembrane Helix	110	131	0.92
Non-Cytoplasmic	132	140	0.72
Transmembrane Helix	141	161	0.78
Cytoplasmic	162	507	0.81