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Protein Overview: SPAC1D4.02c

General Information:
Name(s) found: SPAC1D4.02c [Sanger Pombe]
Description(s) found:
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  • gi|7492615|pir||T38043 probable golgi peripheral membrane protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|5912525|emb|CAB56126.1| human GRASP protein homolog (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113927|ref|NP_593015.1| human GRASP protein homolog (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • gi|18275763|sp|Q10149.2|YAT2_SCHPO RecName: Full=Uncharacterized protein C1D4.02c [NCBI NR]
  • human GRASP protein homolog [Sanger Pombe]
  • Uncharacterized protein C1D4.02c OS=Schizosaccharomyces pombe GN=SPAC1D4.02c PE=2 SV=2 [Swiss-Prot]
  • PUTATIVE SPINDLE CHECKPOINT BY SIMILAR TO S. CEREVISIAE GRH1, HAS SIMILAR TO MAMMALIAN GRASP PROTEINS: Q10149; [pompepVF.fasta]
  • PUTATIVE COMPONENT OF THE SPINDLE CHECKPOINT BY SIMILARITY TO YEAST GRH1, HAS SIMILARITY TO MAMMALIAN GRASP PROTEINS: Q10149; [pompepV13]
  • Hypothetical protein C1D4.02c in chromosome I [pompep4896]
  • |||putative spindle checkpoint protein [pompepnew.fasta]
  • |||spindle checkpoint protein (predicted)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • putative golgi peripheral membrane protein [Schizosaccharomyces pombe]gi|5912525|emb|CAB56126.1| SPAC1D4.02c [Schizosaccharomyces pombe]gi|18275763|sp|Q10149|YAT2_SCHPO Hypothetical protein C1D4.02c in chromosome Igi|7492615|pir||T38043 probable golgi [nrdb_11152004_Chlamydomonas]
  • |||spindle checkpoint protein |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (Q10149) Hypothetical protein C1D4.02c in chromosome I [pompep4896_normal_reversed]
  • |||human GRASP protein homolog |Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPAC1D4.02c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC1D4.02c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • human GRASP protein homolog (predicted) [Schizosaccharomyces pombe 972h-] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • |||human GRASP protein family Golgi protein |Schizosaccharomyces pombe|chr 1|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Uncharacterized protein C1D4.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1D4.02c PE=4 SV=2 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 345 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cell division site [IDALink to PubMed article]
    cell tip [IDALink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Golgi apparatus [ISSLink to PubMed article]
    Biological Process: mitotic cell cycle spindle assembly checkpoint [ISSLink to PubMed article]
    signal transduction [RCALink to PubMed article]
    Golgi organization [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGGLKNFIK EKSEALAGIH RESDESCGFR VLKVENDSKA YNARIESYYD FITAVNGILL  60
   61 NGDPSMFMAL LRDSSPEVTL EVFSLKGQIT RKVNIKINSD EKIGMVLQWA SIAPAVDAIW 120
  121 HILNVIDDSP VARASLVPYE DYIVGTPEGM MTGEKALSDL IESHLNRPLR LYIYNHYRDS 180
  181 TRQVTIVPNR HWGGNGAIGC GVGHGVLHRL PAPLSGPPPQ PGDIVFSNPM LGGPDHKVSQ 240
  241 PSETENFLPT PEPPKIASAN AGSSNEISIP HYQRHKKSHK GAIQDSSIQS YLDEEEKLSR 300
  301 ELDHKTKDAS STNDSQTTPL PPPPPVAVNS TNDESAPQNE ELVKN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..189] PSI-BLAST 26.69897 Protease Do (DegP, HtrA), C-terminal domains; Protease Do (DegP, HtrA), catalytic domain
    2 View Details [190..345] Pfam 25.886057 No description for PF04495.5 was found. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  3.2595117613307 bayes_pls_golite062009
  • protein binding
    		•  2.35875654816667 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.49196113035732 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.387065538161985 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle