YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1D4.02c
Organism:	Schizosaccharomyces pombe
Length:	345 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1D4.02c.

Description	E-value	Query Range	Subject Range
GORS1_RAT - Golgi reassembly-stacking protein 1 OS=Rattus norvegicus GN=Gorasp1 PE=1 SV=4	266.0	[0..14]	[332..2]
gi\|83638659, gi\|... - gi\|84370093\|ref\|NP_001033624.1\| hypothetical protein LOC513771 [Bos taurus], gi\|83638659\|gb\|AAI09692...	264.0	[0..14]	[337..2]
GORASP1 - golgi reassembly stacking protein 1, 65kDa gi\|114586085 - gi\|114586085\|ref\|XP_001171913.1\| PREDICTED: Golgi reassembly stacking protein 1 [Pan troglodytes]	261.0	[0..14]	[332..2]
GORS1_MOUSE - Golgi reassembly-stacking protein 1 OS=Mus musculus GN=Gorasp1 PE=1 SV=3	259.0	[0..14]	[332..2]
gi\|55245513, gi\|... - gi\|58378439\|ref\|XP_308450.2\| ENSANGP00000018341 [Anopheles gambiae str. PEST], gi\|55245513\|gb\|EAA044...	257.0	[0..14]	[239..2]
gi\|60302830, gi\|... - gi\|60302830\|ref\|NP_001012612.1\| golgi reassembly stacking protein 2 [Gallus gallus], gi\|60099201\|emb...	253.0	[0..14]	[323..2]
gi\|42553932, gi\|... - gi\|46125429\|ref\|XP_387268.1\| hypothetical protein FG07092.1 [Gibberella zeae PH-1], gi\|42553932\|gb\|E...	252.0	[0..1]	[311..1]
gi\|74004849 - gi\|74004849\|ref\|XP_545517.2\| PREDICTED: similar to golgi reassembly stacking protein 2 [Canis famili...	249.0	[0..14]	[323..135]

Back

Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGGLKNFIK EKSEALAGIH RESDESCGFR VLKVENDSKA YNARIESYYD FITAVNGILL  60
   61 NGDPSMFMAL LRDSSPEVTL EVFSLKGQIT RKVNIKINSD EKIGMVLQWA SIAPAVDAIW 120
  121 HILNVIDDSP VARASLVPYE DYIVGTPEGM MTGEKALSDL IESHLNRPLR LYIYNHYRDS 180
  181 TRQVTIVPN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	1ky9A
Description:	Protease Do (DegP, HtrA), C-terminal domains; Protease Do (DegP, HtrA), catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	3.2595117613307	bayes_pls_golite062009
protein binding	2.35875654816667	bayes_pls_golite062009
cytoskeletal protein binding	0.49196113035732	bayes_pls_golite062009
transcription regulator activity	0.387065538161985	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [190-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHWGGNGAIG CGVGHGVLHR LPAPLSGPPP QPGDIVFSNP MLGGPDHKVS QPSETENFLP  60
   61 TPEPPKIASA NAGSSNEISI PHYQRHKKSH KGAIQDSSIQ SYLDEEEKLS RELDHKTKDA 120
  121 SSTNDSQTTP LPPPPPVAVN STNDESAPQN EELVKN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.886057
Match:	PF04495.5
Description:	No description for PF04495.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: