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Protein Overview: vti1

General Information:
Name(s) found: vti1 / SPBC3B9.10 [Sanger Pombe]
Description(s) found:
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  • pir||T40349 vesicle transport v-snare protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|2950476|emb|CAA17790.1| SNARE Vti1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113460|ref|NP_596668.1| SNARE Vti1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|12644348|sp|P78768.2|VTI1_SCHPO RecName: Full=Vesicle transport v-SNARE protein vti1 [NCBI NR]
  • SNARE Vti1 [Sanger Pombe]
  • Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe GN=vti1 PE=2 SV=2 [Swiss-Prot]
  • PUTATIVE VESICLE TRANSPORT V-SNARE PROTEIN; SIMILAR TO S. CEREVISIAE VTI1: O43039;P78768; [pompepVF.fasta]
  • PUTATIVE VESICLE TRANSPORT V-SNARE PROTEIN: O43039;P78768; [pompepV13]
  • Vesicle transport v-SNARE protein VTI1 homolog [pompep4896]
  • |vti1||putative vesicle transport v-snare protein [pompepnew.fasta]
  • Vesicle transport v-SNARE protein vti1 [4896.FASTAC]
  • |vti1||SNARE|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • vesicle transport v-snare protein [Schizosaccharomyces pombe]gi|2950476|emb|CAA17790.1| SPBC3B9.10 [Schizosaccharomyces pombe]gi|7493706|pir||T40349 vesicle transport v-snare protein - fission yeast (Schizosaccharomyces pombe)gi|12644348|sp|P78768|VTI [nrdb_11152004_Chlamydomonas]
  • (P78768) Vesicle transport v-SNARE protein VTI1 homolog [pompep4896_normal_reversed]
  • |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC3B9.10 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC3B9.10 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |vti1||SNARE Vti1 |Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 214 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    integral to Golgi membrane [ISSLink to PubMed article]
    Golgi apparatus [IDALink to PubMed article]
    fungal-type vacuole [IDALink to PubMed article]
    Biological Process: vesicle docking [ICLink to PubMed article]
    late endosome to vacuole transport [ISSLink to PubMed article]
    intra-Golgi vesicle-mediated transport [ISSLink to PubMed article]
    intracellular protein transport [IEA]
    Golgi to vacuole transport [ISSLink to PubMed article]
    Molecular Function: SNAP receptor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METYEQEYRL LRADIEEKLN DLSKSGENSV IQSCQRLLNE IDEVIGQMEI EITGIPTSER  60
   61 GLVNGRIRSY RSTLEEWRRH LKEEIGKSDR KALFGNRDET SGDYIASDQD YDQRTRLLQG 120
  121 TNRLEQSSQR LLESQRIANE TEGIGASILR DLHGQRNQLE HSLEMLGDTS GHLDRSLRTL 180
  181 KTMARRLAMN RFFTTAIIAI LVILILLVLY SKFR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..107] PSI-BLAST 11.69897 Solution Structure of RSGI RUH-009, an N-Terminal Domain of Vti1a [Mus musculus]
    2 View Details [108..214] PSI-BLAST 8.69897 No description for 2npsC was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • phosphatidic acid binding
    		•  6.29287857316152 bayes_pls_golite062009
  • SNAP receptor activity
    		•  3.50393203740159 bayes_pls_golite062009
  • calcium channel inhibitor activity
    		•  2.99240433552966 bayes_pls_golite062009
  • protein transporter activity
    		•  2.96543140800925 bayes_pls_golite062009
  • arachidonic acid binding
    		•  2.43181217934756 bayes_pls_golite062009
  • binding
    		•  2.18404492932496 bayes_pls_golite062009
  • SNARE binding
    		•  1.85060343142976 bayes_pls_golite062009
  • protein binding
    		•  1.82422117934251 bayes_pls_golite062009
  • transporter activity
    		•  1.74189664015129 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.49085442233849 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.13101548288086 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.643064875848901 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.370484918396857 bayes_pls_golite062009
  • channel activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  0.0435980899803177 bayes_pls_golite062009
  • phospholipid binding
    		•  0.0172309833091902 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.00476738027966683 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle