| Protein: | vti1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 214 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vti1.
| Description | E-value | Query Range |
Subject Range |
|
|
171.0 | [0..2] | [213..180] |
|
|
166.0 | [0..1] | [209..491] |
|
|
163.0 | [0..2] | [212..6] |
|
|
160.0 | [0..2] | [212..6] |
|
|
153.0 | [0..3] | [188..16] |
|
|
153.0 | [0..3] | [214..86] |
|
|
148.0 | [0..4] | [214..17] |
|
Region A: Residues: [1-107] |
1 11 21 31 41 51
| | | | | |
1 METYEQEYRL LRADIEEKLN DLSKSGENSV IQSCQRLLNE IDEVIGQMEI EITGIPTSER 60
61 GLVNGRIRSY RSTLEEWRRH LKEEIGKSDR KALFGNRDET SGDYIAS
|
| Detection Method: |  |
| Confidence: | 11.69897 |
| Match: | 1vcsA |
| Description: | Solution Structure of RSGI RUH-009, an N-Terminal Domain of Vti1a [Mus musculus] |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| phosphatidic acid binding | 6.29287857316152 | bayes_pls_golite062009 |
| SNAP receptor activity | 3.50393203740159 | bayes_pls_golite062009 |
| calcium channel inhibitor activity | 2.99240433552966 | bayes_pls_golite062009 |
| protein transporter activity | 2.96543140800925 | bayes_pls_golite062009 |
| arachidonic acid binding | 2.43181217934756 | bayes_pls_golite062009 |
| binding | 2.18404492932496 | bayes_pls_golite062009 |
| SNARE binding | 1.85060343142976 | bayes_pls_golite062009 |
| protein binding | 1.82422117934251 | bayes_pls_golite062009 |
| transporter activity | 1.74189664015129 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.49085442233849 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.13101548288086 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.643064875848901 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.370484918396857 | bayes_pls_golite062009 |
| channel activity | 0.0647076360772156 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.0647076360772156 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.0435980899803177 | bayes_pls_golite062009 |
| phospholipid binding | 0.0172309833091902 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.00476738027966683 | bayes_pls_golite062009 |
|
Region A: Residues: [108-214] |
1 11 21 31 41 51
| | | | | |
1 DQDYDQRTRL LQGTNRLEQS SQRLLESQRI ANETEGIGAS ILRDLHGQRN QLEHSLEMLG 60
61 DTSGHLDRSL RTLKTMARRL AMNRFFTTAI IAILVILILL VLYSKFR
|
| Detection Method: | |
| Confidence: | 8.69897 |
| Match: | 2npsC |
| Description: | No description for 2npsC was found. |
