Protein Overview: vti1

General Information:
Name(s) found:	vti1 / SPBC3B9.10 [Sanger Pombe]
Description(s) found: Found 19 descriptions. SHOW ALL	SNARE Vti1 [Sanger Pombe]
Organism:	Schizosaccharomyces pombe
Length:	214 amino acids
Gene Ontology:
Cellular Component:	cytoplasm [IDA] integral to Golgi membrane [ISS] Golgi apparatus [IDA] fungal-type vacuole [IDA]
Biological Process:	vesicle docking [IC] late endosome to vacuole transport [ISS] intra-Golgi vesicle-mediated transport [ISS] intracellular protein transport [IEA] Golgi to vacuole transport [ISS]
Molecular Function:	SNAP receptor activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METYEQEYRL LRADIEEKLN DLSKSGENSV IQSCQRLLNE IDEVIGQMEI EITGIPTSER  60
   61 GLVNGRIRSY RSTLEEWRRH LKEEIGKSDR KALFGNRDET SGDYIASDQD YDQRTRLLQG 120
  121 TNRLEQSSQR LLESQRIANE TEGIGASILR DLHGQRNQLE HSLEMLGDTS GHLDRSLRTL 180
  181 KTMARRLAMN RFFTTAIIAI LVILILLVLY SKFR

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..107]	PSI-BLAST	11.69897	Solution Structure of RSGI RUH-009, an N-Terminal Domain of Vti1a [Mus musculus]
2	View Details	[108..214]	PSI-BLAST	8.69897	No description for 2npsC was found.

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
phosphatidic acid binding	6.29287857316152	bayes_pls_golite062009
SNAP receptor activity	3.50393203740159	bayes_pls_golite062009
calcium channel inhibitor activity	2.99240433552966	bayes_pls_golite062009
protein transporter activity	2.96543140800925	bayes_pls_golite062009
arachidonic acid binding	2.43181217934756	bayes_pls_golite062009
binding	2.18404492932496	bayes_pls_golite062009
SNARE binding	1.85060343142976	bayes_pls_golite062009
protein binding	1.82422117934251	bayes_pls_golite062009
transporter activity	1.74189664015129	bayes_pls_golite062009
substrate-specific transporter activity	1.49085442233849	bayes_pls_golite062009
transmembrane transporter activity	1.13101548288086	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.643064875848901	bayes_pls_golite062009
ion transmembrane transporter activity	0.370484918396857	bayes_pls_golite062009
channel activity	0.0647076360772156	bayes_pls_golite062009
passive transmembrane transporter activity	0.0647076360772156	bayes_pls_golite062009
substrate-specific channel activity	0.0435980899803177	bayes_pls_golite062009
phospholipid binding	0.0172309833091902	bayes_pls_golite062009
cytoskeletal protein binding	0.00476738027966683	bayes_pls_golite062009

2

No functions predicted.

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

[View Details]

Source: Reynolds et al. 2008. Manuscript submitted

Philius confidence legend

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle