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Protein Overview: tfb1

General Information:
Name(s) found: tfb1 / SPAC16E8.11c [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • transcription factor TFIIH complex subunit Tfb1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 477 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    holo TFIIH complex [ISSLink to PubMed article]
    nucleotide-excision repair factor 3 complex [ISSLink to PubMed article]
    Biological Process: nucleotide-excision repair, DNA duplex unwinding [ISSLink to PubMed article]
    regulation of transcription [ICLink to PubMed article]
    transcription initiation from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: general RNA polymerase II transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRVFIVVKE GEDPTSLVFH FTGTPNAREN CDMITNELRN AIQRQREGSQ SKPQGANVDR  60
   61 VNSTNLEKDI DLQESLLTNN PDLLQTFKEA VMKGHLSNEQ FWSTRLHLLR AHAVERSQQR 120
  121 GPYNVLSTIK PKTVDNQMKV SLTGQQIHDM FEQHPLLRKV YDKHVPPLAE GEFWSRFFLS 180
  181 KLCKKLRGDR ITPMDPSDDI MDKYLKDNEE VTKVSDEPIA SHLFDLEGND QNANVIAELR 240
  241 PDITMRIDKE ALPFMKNINQ LSERLLEKSL GNSKRFNNEN EETYLKESGF HDLEEEASDS 300
  301 KVVLKIKGQD QLLENNFVPS KNQVGLEPLP SLEALQHLYQ EDSISLNHIE HDSDSLAEAA 360
  361 MQLTQSMREK HEFETHGTAS NLPIDIKNEI VLCHTVTIEF LHQFWNALLN TTFPDKKAMA 420
  421 PLQNALLNSK KRVEAIASQA QEQNVDPKLV YELVSCTLTS IDTSISEYQR RMSYPPA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..60] MSA 1.035993 View MSA. No confident structure predictions are available.
    2 View Details [61..123] PSI-BLAST 12.154902 No description for 2diiA was found.
    3 View Details [124..190] FFAS03 1.74 Solution structure of the BSD domain of human Synapse associated protein 1
    4 View Details [191..267] deduced N/A No confident structure predictions are available.
    5 View Details [268..477] MSA 2.036983 View MSA. Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle