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Protein Overview: sts5

General Information:
Name(s) found: sts5 / SPCC16C4.09 [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • RNB-like protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1066 amino acids

    Gene Ontology:
    Cellular Component: cell division site [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed articleLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: unidimensional cell growth [IMPLink to PubMed article]
    cell morphogenesis during vegetative growth [IMPLink to PubMed article]
    establishment or maintenance of cell polarity [IMPLink to PubMed article]
    cellular protein localization [IGILink to PubMed article]
    RNA catabolic process [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]
    ribonuclease activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEFENDFP YKVMLNQQQD PSDAQSSPTF VPSANPSLTT PWLQTTPSAN RPTWLPLQQH  60
   61 MHQLRHTGLL PAVESSFVHG HRRSASAGVG MGNFSNQATI PSNSPAVSNM QPPTQGGQPL 120
  121 YPTNFFTTSV SASSDSFPNS PTVPSKFSLN PSVATSTNIS PRRHAKSHSV ASVSSPNSHN 180
  181 AVPFTPHAFV PPVNNASPLP ALNTLPQLLR PRNLDAQWRP SSLSQTNSPT HAANPSFPGT 240
  241 IVTHNTSNFR PEGGGHRHRR STGSLSVGSS GSGFSSGGSG NPRKNLFSPY LPQSSIPALL 300
  301 AERRLVTGIL IVSKKNRSDA FVSVDGLDAE VFICGSKDRN RALEGDVVAI ELLDVDEVWA 360
  361 GKLEKEENRR RKDPISTRGS FDNLRIDAVP FEVPQRSAIK ARDDEQVEGQ TLFLLDQKQL 420
  421 GADEKPKYAG HVVAVLQRAP GQVFSGTLGI LRPSSAANKE RQTSSGNQGS SNNSGNDKPK 480
  481 IVWFKPSDKR VPLIAIPTEQ APTDFLGNDQ AYAQRLFLAS IKRWPVTSLH PFGMLVGELG 540
  541 SMDSMSAQVS ALLHDTGVHS EPWEGSAATS AVTALNALSD NFLNVAGCAD YRSEDVFLFV 600
  601 KNDVSKAAVS EVKQHESNIN SSSATDFVSS AFHIRPTSTG YHVGIHVTDV SRVIEPGSPL 660
  661 DRELQRRSIA VNLCQKSVPL FPTTLGEALS LREDKDCYTM SLLLDVSSTG KIRGTWIGWA 720
  721 VIRPRKAYTM KEADELLQTD ARLRLFHTVS SRLRTHHLGT DVPLSRYCRL VRRWDEESCS 780
  781 FDPNETNLFI SSAVEVLRET LLDAANRAVA SHLRQEFREN AFLRTQRLPS RENCRILQSM 840
  841 AIQMGCVLDL SSTKSLLRSL SLIEDDTVRN ILQLYYYKVT PRAVYEMQKY KGNLASQMMS 900
  901 LGIEDESDDL THFTAPLERY GDIVVHYQLQ LLLRGELASE KRLRVWSQAA NDASRRLVIS 960
  961 KFAQETSIHI KIFSDWAESQ VWQDGLVCFV APSYFDVFFP SLGMEKRVHL DLLNLTHVRF1020
 1021 EEDQGILSLY DESGAVTVVK LLTSVKVKLF VQLSTPPLIN VSNVEF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..282] PSI-BLAST 5.09691 No description for 1y0fB was found.
    2 View Details [283..391] FFAS03 1.83 No description for 2ix1A was found.
    3 View Details [392..1066] PSI-BLAST 141.0 No description for 2id0A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ribonuclease activity
    		•  2.32554576887038 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.31023033292472 bayes_pls_golite062009
  • binding
    		•  1.91354836378639 bayes_pls_golite062009
  • DNA binding
    		•  1.58407383437312 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.744525104248818 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.711652134580609 bayes_pls_golite062009
  • hydrolase activity
    		•  0.36612167208566 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.213032323847851 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.178963038157113 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.127292592340605 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.118782738119504 bayes_pls_golite062009
  • protein binding
    		•  0.0856707433885143 bayes_pls_golite062009
    3
    Term Confidence Notes
  • ribonuclease activity
    		•  2.62839959678464 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.51640430970576 bayes_pls_golite062009
  • binding
    		•  1.99628257193121 bayes_pls_golite062009
  • DNA binding
    		•  1.75130537402007 bayes_pls_golite062009
  • exoribonuclease activity
    		•  1.04185075327062 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  1.0113847021033 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.477952624136452 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.440010017405756 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.373494794810156 bayes_pls_golite062009
  • hydrolase activity
    		•  0.357828165699872 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.223941674251642 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.19668406318255 bayes_pls_golite062009
  • structural molecule activity
    		•  0.0731323814416581 bayes_pls_golite062009
  • protein binding
    		•  0.0528188351789111 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle