YRC Public Data Repository - Protein Structure Prediction

Protein:	sts5
Organism:	Schizosaccharomyces pombe
Length:	1066 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sts5.

Description	E-value	Query Range	Subject Range
gi\|11359056, gi\|... - gi\|2645173\|dbj\|BAA23619.1\| sts5+ [Schizosaccharomyces pombe], pir\|\|T45283 growth polarity maintenanc...	782.0	[0..1]	[1066..1]
gi\|49176467, gi\|... - gi\|49176467\|ref\|NP_418600.3\| RNase R [Escherichia coli K12], gb\|AAC77136.1\| ribonuclease R; RNase R ... gi\|1361201, gi\|5... - gi\|537020\|gb\|AAA97075.1\| vacB [Escherichia coli], pir\|\|S56404 virulence-associated protein vacB homo... gi\|537020\|gb\|AAA... - vacB [Escherichia coli]	734.0	[0..268]	[1064..10]
gi\|82546580, gi\|... - gi\|82546580\|ref\|YP_410527.1\| putative enzyme [Shigella boydii Sb227], gi\|81247991\|gb\|ABB68699.1\| put...	734.0	[0..268]	[1064..10]
gi\|24054862, gi\|... - gi\|24115534\|ref\|NP_710044.1\| putative enzyme [Shigella flexneri 2a str. 301], gi\|24054862\|gb\|AAN4575... gi\|30065551, gi\|... - gi\|30065551\|ref\|NP_839722.1\| putative enzyme [Shigella flexneri 2a str. 2457T], gi\|30043815\|gb\|AAP19...	734.0	[0..268]	[1064..10]
gi\|75179450 - gi\|75179450\|ref\|ZP_00699454.1\| COG0557: Exoribonuclease R [Shigella boydii BS512]	734.0	[0..268]	[1064..10]
gi\|15804768, gi\|... - gi\|15804768\|ref\|NP_290809.1\| putative enzyme [Escherichia coli O157:H7 EDL933], gi\|12519167\|gb\|AAG59... gi\|13364632 - gi\|13364632\|dbj\|BAB38578.1\| putative enzyme [Escherichia coli O157:H7 str. Sakai] gi\|13364632 - gi\|13364632\|dbj\|BAB38578.1\| putative enzyme [Escherichia coli O157:H7] gi\|25298860, gi\|... - pir\|\|C86114 probable enzyme vacB [imported] - Escherichia coli (strain O157:H7, substrain EDL933), ...	733.0	[0..268]	[1064..10]
gi\|117626525, gi... - gi\|117626525\|ref\|YP_859848.1\| exoribonuclease R [Escherichia coli APEC O1], gi\|115515649\|gb\|ABJ03724... gi\|237703846, gi... - gi\|237703846\|ref\|ZP_04534327.1\| exoribonuclease R [Escherichia sp. 3_2_53FAA], gi\|226901758\|gb\|EEH88... gi\|91213728, gi\|... - gi\|91213728\|ref\|YP_543714.1\| putative enzyme [Escherichia coli UTI89], gi\|91075302\|gb\|ABE10183.1\| pu...	732.0	[0..268]	[1064..10]
gi\|238903286, gi... - gi\|238903286\|ref\|YP_002929082.1\| exoribonuclease R, RNase R [Escherichia coli BW2952], gi\|238861060\|... gi\|194439533, gi... - gi\|83585083\|ref\|ZP_00923736.1\| COG0557: Exoribonuclease R [Escherichia coli 101-1], gi\|194439533\|ref... EG11259 - exoribonuclease R, RNase R / Exoribonuclease R, RNase R gi\|85676930, gi\|... - gi\|89110899\|ref\|AP_004679.1\| exoribonuclease R, RNase R [Escherichia coli str. K-12 substr. W3110], ... RNR_ECOLI - Ribonuclease R (EC 3.1.-.-) (RNase R) (Protein vacB) - Escherichia coli EG11259 - exoribonuclease R, RNase R / Exoribonuclease R, RNase R gi\|169891460, gi... - gi\|170083625\|ref\|YP_001732945.1\| exoribonuclease R, RNase R [Escherichia coli str. K-12 substr. DH10... gi\|253976009, gi... - gi\|254164108\|ref\|YP_003047216.1\| exoribonuclease R, RNase R [Escherichia coli B str. REL606], gi\|253... gi\|253775196, gi... - gi\|254290858\|ref\|YP_003056606.1\| exoribonuclease R, RNase R [Escherichia coli BL21(DE3)], gi\|2539801... gi\|251787428, gi... - gi\|251787428\|ref\|YP_003001732.1\| hypothetical protein B21_04008 [Escherichia coli BL21], gi\|24237970...	732.0	[0..273]	[1064..1]
gi\|227836351, gi... - gi\|227886778\|ref\|ZP_04004583.1\| exoribonuclease R [Escherichia coli 83972], gi\|227836351\|gb\|EEJ46817... gi\|26251071, gi\|... - gi\|26251071\|ref\|NP_757111.1\| Ribonuclease R [Escherichia coli CFT073], gi\|26111503\|gb\|AAN83685.1\|AE0...	732.0	[0..268]	[1064..10]
gi\|91227444, gi\|... - gi\|91227444\|ref\|ZP_01261808.1\| ribonuclease R [Vibrio alginolyticus 12G01], gi\|91188594\|gb\|EAS74885....	732.0	[0..269]	[1065..1]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEFENDFP YKVMLNQQQD PSDAQSSPTF VPSANPSLTT PWLQTTPSAN RPTWLPLQQH  60
   61 MHQLRHTGLL PAVESSFVHG HRRSASAGVG MGNFSNQATI PSNSPAVSNM QPPTQGGQPL 120
  121 YPTNFFTTSV SASSDSFPNS PTVPSKFSLN PSVATSTNIS PRRHAKSHSV ASVSSPNSHN 180
  181 AVPFTPHAFV PPVNNASPLP ALNTLPQLLR PRNLDAQWRP SSLSQTNSPT HAANPSFPGT 240
  241 IVTHNTSNFR PEGGGHRHRR STGSLSVGSS GSGFSSGGSG NP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.09691
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [283-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKNLFSPYLP QSSIPALLAE RRLVTGILIV SKKNRSDAFV SVDGLDAEVF ICGSKDRNRA  60
   61 LEGDVVAIEL LDVDEVWAGK LEKEENRRRK DPISTRGSFD NLRIDAVPF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.83
Match:	2ix1A
Description:	No description for 2ix1A was found.

Predicted functions:

Term	Confidence	Notes
ribonuclease activity	2.32554576887038	bayes_pls_golite062009
nucleic acid binding	2.31023033292472	bayes_pls_golite062009
binding	1.91354836378639	bayes_pls_golite062009
DNA binding	1.58407383437312	bayes_pls_golite062009
exoribonuclease activity	0.744525104248818	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	0.711652134580609	bayes_pls_golite062009
hydrolase activity	0.36612167208566	bayes_pls_golite062009
3'-5'-exoribonuclease activity	0.213032323847851	bayes_pls_golite062009
structural constituent of ribosome	0.178963038157113	bayes_pls_golite062009
structure-specific DNA binding	0.127292592340605	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.118782738119504	bayes_pls_golite062009
protein binding	0.0856707433885143	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [392-1066]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVPQRSAIKA RDDEQVEGQT LFLLDQKQLG ADEKPKYAGH VVAVLQRAPG QVFSGTLGIL  60
   61 RPSSAANKER QTSSGNQGSS NNSGNDKPKI VWFKPSDKRV PLIAIPTEQA PTDFLGNDQA 120
  121 YAQRLFLASI KRWPVTSLHP FGMLVGELGS MDSMSAQVSA LLHDTGVHSE PWEGSAATSA 180
  181 VTALNALSDN FLNVAGCADY RSEDVFLFVK NDVSKAAVSE VKQHESNINS SSATDFVSSA 240
  241 FHIRPTSTGY HVGIHVTDVS RVIEPGSPLD RELQRRSIAV NLCQKSVPLF PTTLGEALSL 300
  301 REDKDCYTMS LLLDVSSTGK IRGTWIGWAV IRPRKAYTMK EADELLQTDA RLRLFHTVSS 360
  361 RLRTHHLGTD VPLSRYCRLV RRWDEESCSF DPNETNLFIS SAVEVLRETL LDAANRAVAS 420
  421 HLRQEFRENA FLRTQRLPSR ENCRILQSMA IQMGCVLDLS STKSLLRSLS LIEDDTVRNI 480
  481 LQLYYYKVTP RAVYEMQKYK GNLASQMMSL GIEDESDDLT HFTAPLERYG DIVVHYQLQL 540
  541 LLRGELASEK RLRVWSQAAN DASRRLVISK FAQETSIHIK IFSDWAESQV WQDGLVCFVA 600
  601 PSYFDVFFPS LGMEKRVHLD LLNLTHVRFE EDQGILSLYD ESGAVTVVKL LTSVKVKLFV 660
  661 QLSTPPLINV SNVEF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	141.0
Match:	2id0A
Description:	No description for 2id0A was found.

Predicted functions:

Term	Confidence	Notes
ribonuclease activity	2.62839959678464	bayes_pls_golite062009
nucleic acid binding	2.51640430970576	bayes_pls_golite062009
binding	1.99628257193121	bayes_pls_golite062009
DNA binding	1.75130537402007	bayes_pls_golite062009
exoribonuclease activity	1.04185075327062	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	1.0113847021033	bayes_pls_golite062009
3'-5'-exoribonuclease activity	0.477952624136452	bayes_pls_golite062009
structure-specific DNA binding	0.440010017405756	bayes_pls_golite062009
structural constituent of ribosome	0.373494794810156	bayes_pls_golite062009
hydrolase activity	0.357828165699872	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.223941674251642	bayes_pls_golite062009
single-stranded DNA binding	0.19668406318255	bayes_pls_golite062009
structural molecule activity	0.0731323814416581	bayes_pls_golite062009
protein binding	0.0528188351789111	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: