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Protein Overview: rpc34

General Information:
Name(s) found: rpc34 / SPCC290.02 [Sanger Pombe]
Description(s) found:
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  • gi|9297041|sp|O94553.1|RPC6_SCHPO RecName: Full=Probable DNA-directed RNA polymerase III subunit rpc6; Short=RNA polymerase III subunit C6; AltName: Full=RNA polymerase III subunit C34; AltName: Full=DNA-directed RNA polymerase III 34 kDa polypeptide [NCBI NR]
  • gi|76782161|gb|ABA54851.1| RNA polymerase III subunit Rpc34 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|7490489|pir||T41266 dna-directed rna polymerase iii subunit - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|4176538|emb|CAA22872.1| DNA-directed RNA polymerase III complex subunit Rpc34 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19075898|ref|NP_588398.1| DNA-directed RNA polymerase III complex subunit Rpc34 [Schizosaccharomyces pombe] [NCBI NR]
  • DNA-directed RNA polymerase III complex subunit Rpc34 [Sanger Pombe]
  • Probable DNA-directed RNA polymerase III subunit rpc6 OS=Schizosaccharomyces pombe GN=rpc6 PE=2 SV=1 [Swiss-Prot]
  • DNA-DIRECTED RNA POLYMERASE III SUBUNIT: O94553; [pompepVF.fasta]
  • Probable DNA-directed RNA polymerase III 34 kDa polypeptide (EC 2.7.7.6) [pompep4896]
  • |rpc34||DNA-directed RNA polymerase III subunit [pompepnew.fasta]
  • |rpc34||localization DNA-directed RNA polymerase III complex (subunit)|Schizosaccharomyces pombe|chr 3|||Manual [pombe041504.fasta]
  • dna-directed rna polymerase iii subunit [Schizosaccharomyces pombe]gi|4176538|emb|CAA22872.1| SPCC290.02 [Schizosaccharomyces pombe]gi|7490489|pir||T41266 dna-directed rna polymerase iii subunit - fission yeast (Schizosaccharomyces pombe)gi|9297041|sp [nrdb_11152004_Chlamydomonas]
  • |rpc34||localization DNA-directed RNA polymerase III complex |Schizosaccharomyces pombe|chr 3|||Manual [pompep2242005.fasta]
  • (O94553) Probable DNA-directed RNA polymerase III 34 kDa polypeptide (EC 2.7.7.6) [pompep4896_normal_reversed]
  • |rpc34||DNA-directed RNA polymerase III complex subunit Rpc34|Schizosaccharomyces pombe|chr 3|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • RNA polymerase III subunit Rpc34 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • SPCC290.02 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Probable DNA-directed RNA polymerase III 34 kDa polypeptide [nr-271106-contam.fasta]
  • hypothetical protein SPCC290.02 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |rpc34||DNA-directed RNA polymerase III complex subunit Rpc34 |Schizosaccharomyces pombe|chr 3|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Probable DNA-directed RNA polymerase III subunit rpc6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc6 PE=2 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 301 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    DNA-directed RNA polymerase III complex [ISSLink to PubMed article]
    Biological Process: transcription from RNA polymerase III promoter [ISSLink to PubMed article]
    Molecular Function: DNA binding [IEA]
    DNA-directed RNA polymerase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQLRTLPK NAKVIYEHCL KQIPNSLSQQ DLVEAIGASI SVNDLSSALN ILLSRRLLDP  60
   61 LRQGNVLVYR AVRLDEAKTV STMEGDEQIV YSFIKNSGNE GIWRKTLTLR TNLHVSVVDR 120
  121 CLKSLESKNL VKSIKSVKNP TRKIYMLYDL VPSTELTGGP WFTDQELDVE FIENLKKVIY 180
  181 RYVHSKSFPP KKAAMGPDLV WGPEYNGYPT ALQIHNWLRS TNITKVDLSL ANVISLVDVL 240
  241 IYDGKVEKRS DGASYRAIRV NNENIDAFTE SPCGNCPVSD ICDANSRVNP ITCEYLDKWL 300
  301 N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..84] FFAS03 1.21 No description for 2dk8A was found.
    2 View Details [85..137] PSI-BLAST 27.522879 No description for 2yu3A was found.
    3 View Details [138..301] Pfam 45.958607 No description for PF05158.3 was found. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  5.23858959608048 bayes_pls_golite062009
  • DNA binding
    		•  4.78517210147551 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.72059012764202 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  4.34522534923857 bayes_pls_golite062009
  • RNA polymerase activity
    		•  4.34522534923857 bayes_pls_golite062009
  • transcription factor activity
    		•  4.02736190679869 bayes_pls_golite062009
  • binding
    		•  3.37660003833383 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  2.82260867370675 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.21432668306508 bayes_pls_golite062009
  • transferase activity
    		•  2.21031006146354 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  2.16473039675898 bayes_pls_golite062009
  • transcription activator activity
    		•  2.13702350917359 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.9708626903609 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.50332889556988 bayes_pls_golite062009
  • transcription factor binding
    		•  0.752335897765285 bayes_pls_golite062009
  • protein binding
    		•  0.726445167461826 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.451714629708561 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle