| Protein: | rpc34 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 301 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpc34.
| Description | E-value | Query Range |
Subject Range |
|
|
411.0 | [0..1] | [300..56] |
|
|
408.0 | [0..1] | [300..1] |
|
|
406.0 | [0..1] | [300..1] |
|
|
406.0 | [0..1] | [300..1] |
|
|
403.0 | [0..1] | [300..1] |
|
|
403.0 | [0..1] | [300..1] |
|
|
401.0 | [0..1] | [300..31] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MADQLRTLPK NAKVIYEHCL KQIPNSLSQQ DLVEAIGASI SVNDLSSALN ILLSRRLLDP 60
61 LRQGNVLVYR AVRLDEAKTV STME
|
| Detection Method: |  |
| Confidence: | 1.21 |
| Match: | 2dk8A |
| Description: | No description for 2dk8A was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 5.23858959608048 | bayes_pls_golite062009 |
| DNA binding | 4.78517210147551 | bayes_pls_golite062009 |
| nucleic acid binding | 4.72059012764202 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 4.34522534923857 | bayes_pls_golite062009 |
| RNA polymerase activity | 4.34522534923857 | bayes_pls_golite062009 |
| transcription factor activity | 4.02736190679869 | bayes_pls_golite062009 |
| binding | 3.37660003833383 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 2.82260867370675 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.21432668306508 | bayes_pls_golite062009 |
| transferase activity | 2.21031006146354 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 2.16473039675898 | bayes_pls_golite062009 |
| transcription activator activity | 2.13702350917359 | bayes_pls_golite062009 |
| transcription repressor activity | 1.9708626903609 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.50332889556988 | bayes_pls_golite062009 |
| transcription factor binding | 0.752335897765285 | bayes_pls_golite062009 |
| protein binding | 0.726445167461826 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.451714629708561 | bayes_pls_golite062009 |
|
Region A: Residues: [85-137] |
1 11 21 31 41 51
| | | | | |
1 GDEQIVYSFI KNSGNEGIWR KTLTLRTNLH VSVVDRCLKS LESKNLVKSI KSV
|
| Detection Method: | |
| Confidence: | 27.522879 |
| Match: | 2yu3A |
| Description: | No description for 2yu3A was found. |
|
Region A: Residues: [138-301] |
1 11 21 31 41 51
| | | | | |
1 KNPTRKIYML YDLVPSTELT GGPWFTDQEL DVEFIENLKK VIYRYVHSKS FPPKKAAMGP 60
61 DLVWGPEYNG YPTALQIHNW LRSTNITKVD LSLANVISLV DVLIYDGKVE KRSDGASYRA 120
121 IRVNNENIDA FTESPCGNCP VSDICDANSR VNPITCEYLD KWLN
|
| Detection Method: | |
| Confidence: | 45.958607 |
| Match: | PF05158.3 |
| Description: | No description for PF05158.3 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
