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Protein Overview: rad1

General Information:
Name(s) found: rad1 / SPAC1952.07 [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • checkpoint clamp complex protein Rad1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 323 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    checkpoint clamp complex [IDALink to PubMed article]
    Biological Process: DNA damage checkpoint [IMPLink to PubMed article]
    DNA repair [IMPLink to PubMed article]
    DNA replication checkpoint [IMPLink to PubMed article]
    intra-S DNA damage checkpoint [IMPLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]
    damaged DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQAETVCLK QIQSTLRCID FSKECTIEIT SRGLRFAVEE SQSLQAHAFL DKSLFQTFNF  60
   61 QGDSDGDTYM FQTMISPLLQ SLSIYTDGKE RISTSAWDQP TVNIMHKRGV ICKVQYNGPG 120
  121 CPFIWEVEEM AGYATACELL TMECEDDVDI NRLASTLCTK IIMKSNWLYD ALVELDNNMG 180
  181 ENLIIHTSSQ KSTFLLRCVG ALSTTEIEYP NEKSVLESFE TDSENTYSYR FSLIRHALKA 240
  241 LQVGSKVNLR IDENGTLSIQ IMLVGQEGLC TFVDFCIVPL DLVSEDEEED EEEEPAESNQ 300
  301 SDNNVLRNDP NYRGDAETED EDS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..323] PSI-BLAST 82.09691 Prolifirating cell nuclear antigen (PCNA)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed DNA polymerase activity
    		•  5.01426276108174 bayes_pls_golite062009
  • DNA polymerase activity
    		•  4.9656505576274 bayes_pls_golite062009
  • DNA polymerase processivity factor activity
    		•  3.26999202934887 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  3.23598180825386 bayes_pls_golite062009
  • DNA binding
    		•  2.06316167255592 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.02054974752473 bayes_pls_golite062009
  • binding
    		•  1.88302251910664 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.14392061238362 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.785542777582287 bayes_pls_golite062009
  • mismatched DNA binding
    		•  0.552326589459571 bayes_pls_golite062009
  • catalytic activity
    		•  0.48077242755678 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.457118392479642 bayes_pls_golite062009
  • protein binding
    		•  0.452894757163315 bayes_pls_golite062009
  • DNA insertion or deletion binding
    		•  0.366820812506101 bayes_pls_golite062009
  • transferase activity
    		•  0.345371754708312 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle