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Protein Overview: nrd1

General Information:
Name(s) found: nrd1 / SPAC2F7.11 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • RNA-binding protein Nrd1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 529 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: negative regulation of conjugation with cellular fusion [IGILink to PubMed article]
    Molecular Function: RNA binding [TASLink to PubMed article]
    protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSPSSQS RLSVPGRTPH LPPLTIPHTV SAEGLATPNT PHALLPTGLL MGSPFVQSPT  60
   61 SYTSMHGLPF STTQMAAAPA HPTTGYNVSR VTSPNVANFA PGYFPLPNNT TQPVKTVYVG 120
  121 NLPPNTPIDE ILSCVRTGPI ESAWILPEKN CAFISFLDPS HATAFFQDAA LKRLTIRGTE 180
  181 VKVGWGKNSA SNSSVLLAVQ QSGACRNVFL GNLPNGITED EIREDLEPFG PIDQIKIVTE 240
  241 RNIAFVHFLN IAAAIKAVQE LPLNPKWSKR RIYYGRDRCA VGLKQPAYFS KGQVGVVGGY 300
  301 PVMGYPPPSP VLQKPDLIMT GNRTVYIGNI HADTTIEEIC NAVRGGLLHN IRYLQEKHIC 360
  361 FVTFVDPVSA FRFFEMSNIH GLVIRNRRLK IGWGKHSGPL PSNIALAVAG GASRNIYIGN 420
  421 ADDSLTIERL KEDFEEFGEI EYVNFFREKN CAFVNFTSLA SAINAIDRIK QKKGYENYRI 480
  481 SYGKDRCGNP PRTNSKSDVL SVSSDMSMPV DLVVPQQGIS GFMPTNSNI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..99] MSA 1.285996 View MSA. No confident structure predictions are available.
    2 View Details [100..199] PSI-BLAST 28.09691 HNRNP A1 (RBD1,2) FROM HOMO SAPIENS
    3 View Details [200..529] PSI-BLAST 15.221849 No description for 2ghpA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.18221750600272 bayes_pls_golite062009
  • RNA binding
    		•  2.25701618391425 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • mRNA binding
    		•  1.01333229070461 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.400831329848221 bayes_pls_golite062009
  • DNA binding
    		•  0.341018037712367 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.18221750600272 bayes_pls_golite062009
  • RNA binding
    		•  2.25701618391425 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • mRNA binding
    		•  1.01333229070461 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.400831329848221 bayes_pls_golite062009
  • DNA binding
    		•  0.341018037712367 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.75

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle