| Protein: | nrd1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 529 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nrd1.
| Description | E-value | Query Range |
Subject Range |
|
|
222.0 | [0..113] | [527..9] |
|
|
221.0 | [0..113] | [527..9] |
|
|
217.0 | [0..113] | [527..9] |
|
Region A: Residues: [1-99] |
1 11 21 31 41 51
| | | | | |
1 MSSSSPSSQS RLSVPGRTPH LPPLTIPHTV SAEGLATPNT PHALLPTGLL MGSPFVQSPT 60
61 SYTSMHGLPF STTQMAAAPA HPTTGYNVSR VTSPNVANF
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [100-199] |
1 11 21 31 41 51
| | | | | |
1 APGYFPLPNN TTQPVKTVYV GNLPPNTPID EILSCVRTGP IESAWILPEK NCAFISFLDP 60
61 SHATAFFQDA ALKRLTIRGT EVKVGWGKNS ASNSSVLLAV
|
| Detection Method: | |
| Confidence: | 28.09691 |
| Match: | 1ha1A |
| Description: | HNRNP A1 (RBD1,2) FROM HOMO SAPIENS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| nucleic acid binding | 3.18221750600272 | bayes_pls_golite062009 |
| RNA binding | 2.25701618391425 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA binding | 1.01333229070461 | bayes_pls_golite062009 |
| transcription regulator activity | 0.400831329848221 | bayes_pls_golite062009 |
| DNA binding | 0.341018037712367 | bayes_pls_golite062009 |
|
Region A: Residues: [200-529] |
1 11 21 31 41 51
| | | | | |
1 QQSGACRNVF LGNLPNGITE DEIREDLEPF GPIDQIKIVT ERNIAFVHFL NIAAAIKAVQ 60
61 ELPLNPKWSK RRIYYGRDRC AVGLKQPAYF SKGQVGVVGG YPVMGYPPPS PVLQKPDLIM 120
121 TGNRTVYIGN IHADTTIEEI CNAVRGGLLH NIRYLQEKHI CFVTFVDPVS AFRFFEMSNI 180
181 HGLVIRNRRL KIGWGKHSGP LPSNIALAVA GGASRNIYIG NADDSLTIER LKEDFEEFGE 240
241 IEYVNFFREK NCAFVNFTSL ASAINAIDRI KQKKGYENYR ISYGKDRCGN PPRTNSKSDV 300
301 LSVSSDMSMP VDLVVPQQGI SGFMPTNSNI
|
| Detection Method: | |
| Confidence: | 15.221849 |
| Match: | 2ghpA |
| Description: | No description for 2ghpA was found. |
| Term | Confidence | Notes |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| nucleic acid binding | 3.18221750600272 | bayes_pls_golite062009 |
| RNA binding | 2.25701618391425 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA binding | 1.01333229070461 | bayes_pls_golite062009 |
| transcription regulator activity | 0.400831329848221 | bayes_pls_golite062009 |
| DNA binding | 0.341018037712367 | bayes_pls_golite062009 |
