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Protein Overview: nxt3

General Information:
Name(s) found: nxt3 / SPBP8B7.11 [Sanger Pombe]
Description(s) found:
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  • pir||T40805 probable RNA-binding protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|3810835|emb|CAA21796.1| ubiquitin protease cofactor (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113310|ref|NP_596518.1| ubiquitin protease cofactor (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • gi|14916569|sp|O94260.1|G3BP_SCHPO RecName: Full=Putative G3BP-like protein [NCBI NR]
  • ubiquitin protease cofactor [Sanger Pombe]
  • Putative G3BP-like protein OS=Schizosaccharomyces pombe GN=nxt3 PE=1 SV=1 [Swiss-Prot]
  • RNA-BINDING PROTEIN; NUCLEAR CYTOPLASMIC TRANSPORT NTF2 HOMOLOG: O94260; [pompepVF.fasta]
  • Putative G3BP-like protein [pompep4896]
  • |||RNA-binding protein [pompepnew.fasta]
  • |nxt3||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • putative RNA-binding protein [Schizosaccharomyces pombe]gi|3810835|emb|CAA21796.1| SPBP8B7.11 [Schizosaccharomyces pombe]gi|7492932|pir||T40805 probable RNA-binding protein - fission yeast (Schizosaccharomyces pombe)gi|14916569|sp|O94260|G3BP_SCHPO Pu [nrdb_11152004_Chlamydomonas]
  • (O94260) Putative G3BP-like protein [pompep4896_normal_reversed]
  • |||ubiquitin protease cofactor |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBP8B7.11 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBP8B7.11 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |nxt3||ubiquitin protease cofactor |Schizosaccharomyces pombe|chr 2|||Manual [spombe-190209-contam.fasta]
  • |nxt3|glp1|ubiquitin protease cofactor Glp1 |Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 434 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: protein deubiquitination [ISSLink to PubMed article]
    regulation of ER to Golgi vesicle-mediated transport [ISSLink to PubMed article]
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAENATLLE PVLGKDEIGW MFVQEYYTYL NKEPNRLHCF YTKKSTLIHG DEGESISLCH  60
   61 GQQEIHNKIL DLDFQNCKVL ISNVDSLASS NGGIVIQVLG EMSNKGKLSR KFAQTFFLAE 120
  121 QPNGYFVLND IFRFLREDVE EEEESPDAVE KEKKDVASEP YVNGVQSQEH LPSAKEEGHY 180
  181 QDPAATENNF ATAALISNET DSLNQATLAV PEEPVIQVTE ASVPSFVSQQ ENQLQDEALT 240
  241 SNSKNADAIG ASDANVATAP KSWADLIARN HPDVKSQASV SSTASTTGQT VKGVNADQTQ 300
  301 QPTAPYTQSN ELLETSVFVK NIPPETSDVS LKSAMSIFGP VKAIEFARRK GTAYVDFVNH 360
  361 ECVQLALNKK TLQINNATLN IEERRRLFSG KFNKSGDKKS NDNYNGMKRN FRKGNRGAFD 420
  421 GRSKEVTTSK KQNN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..138] PSI-BLAST 31.0 Nuclear transport factor-2 (NTF2)
    2 View Details [139..199] deduced N/A No confident structure predictions are available.
    3 View Details [200..434] PSI-BLAST 27.30103 Poly(A)-binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein binding
    		•  1.74084472095013 bayes_pls_golite062009
  • binding
    		•  1.29138202593822 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.983337869604082 bayes_pls_golite062009
  • protein transporter activity
    		•  0.960383711156379 bayes_pls_golite062009
  • kinase activity
    		•  0.871357091497469 bayes_pls_golite062009
  • protein serine/threonine kinase activity
    		•  0.797931524291551 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.662760637049546 bayes_pls_golite062009
  • protein kinase activity
    		•  0.622060011038738 bayes_pls_golite062009
  • transporter activity
    		•  0.55283159394909 bayes_pls_golite062009
  • Ran GTPase binding
    		•  0.437541267934309 bayes_pls_golite062009
  • transferase activity
    		•  0.250005906709975 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0725168535072961 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • nucleic acid binding
    		•  2.43517729895315 bayes_pls_golite062009
  • binding
    		•  2.41127885655304 bayes_pls_golite062009
  • RNA binding
    		•  1.96321378335448 bayes_pls_golite062009
  • protein binding
    		•  1.52056358240529 bayes_pls_golite062009
  • mRNA binding
    		•  0.79383576791259 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.681978520687901 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.494091580976874 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.257073928625242 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle