| Protein: | nxt3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 434 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nxt3.
| Description | E-value | Query Range |
Subject Range |
|
|
207.0 | [0..3] | [395..58] |
|
|
207.0 | [0..1] | [394..62] |
|
|
200.0 | [0..1] | [394..2] |
|
|
200.0 | [0..8] | [407..1] |
|
|
200.0 | [0..8] | [407..1] |
|
|
199.0 | [0..8] | [418..1] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MTAENATLLE PVLGKDEIGW MFVQEYYTYL NKEPNRLHCF YTKKSTLIHG DEGESISLCH 60
61 GQQEIHNKIL DLDFQNCKVL ISNVDSLASS NGGIVIQVLG EMSNKGKLSR KFAQTFFLAE 120
121 QPNGYFVLND IFRFLRED
|
| Detection Method: |  |
| Confidence: | 31.0 |
| Match: | 1a2kA |
| Description: | Nuclear transport factor-2 (NTF2) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.74084472095013 | bayes_pls_golite062009 |
| binding | 1.29138202593822 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.983337869604082 | bayes_pls_golite062009 |
| protein transporter activity | 0.960383711156379 | bayes_pls_golite062009 |
| kinase activity | 0.871357091497469 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.797931524291551 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.662760637049546 | bayes_pls_golite062009 |
| protein kinase activity | 0.622060011038738 | bayes_pls_golite062009 |
| transporter activity | 0.55283159394909 | bayes_pls_golite062009 |
| Ran GTPase binding | 0.437541267934309 | bayes_pls_golite062009 |
| transferase activity | 0.250005906709975 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0725168535072961 | bayes_pls_golite062009 |
|
Region A: Residues: [139-199] |
1 11 21 31 41 51
| | | | | |
1 VEEEEESPDA VEKEKKDVAS EPYVNGVQSQ EHLPSAKEEG HYQDPAATEN NFATAALISN 60
61 E
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [200-434] |
1 11 21 31 41 51
| | | | | |
1 TDSLNQATLA VPEEPVIQVT EASVPSFVSQ QENQLQDEAL TSNSKNADAI GASDANVATA 60
61 PKSWADLIAR NHPDVKSQAS VSSTASTTGQ TVKGVNADQT QQPTAPYTQS NELLETSVFV 120
121 KNIPPETSDV SLKSAMSIFG PVKAIEFARR KGTAYVDFVN HECVQLALNK KTLQINNATL 180
181 NIEERRRLFS GKFNKSGDKK SNDNYNGMKR NFRKGNRGAF DGRSKEVTTS KKQNN
|
| Detection Method: | |
| Confidence: | 27.30103 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.43517729895315 | bayes_pls_golite062009 |
| binding | 2.41127885655304 | bayes_pls_golite062009 |
| RNA binding | 1.96321378335448 | bayes_pls_golite062009 |
| protein binding | 1.52056358240529 | bayes_pls_golite062009 |
| mRNA binding | 0.79383576791259 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.681978520687901 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.494091580976874 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.257073928625242 | bayes_pls_golite062009 |
