Protein Overview: nxt3

General Information:
Name(s) found:	nxt3 / SPBP8B7.11 [Sanger Pombe]
Description(s) found: Found 18 descriptions. SHOW ALL	ubiquitin protease cofactor [Sanger Pombe]
Organism:	Schizosaccharomyces pombe
Length:	434 amino acids
Gene Ontology:
Cellular Component:	cytoplasm [ISS] cytosol [IDA]
Biological Process:	protein deubiquitination [ISS] regulation of ER to Golgi vesicle-mediated transport [ISS]
Molecular Function:	RNA binding [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAENATLLE PVLGKDEIGW MFVQEYYTYL NKEPNRLHCF YTKKSTLIHG DEGESISLCH  60
   61 GQQEIHNKIL DLDFQNCKVL ISNVDSLASS NGGIVIQVLG EMSNKGKLSR KFAQTFFLAE 120
  121 QPNGYFVLND IFRFLREDVE EEEESPDAVE KEKKDVASEP YVNGVQSQEH LPSAKEEGHY 180
  181 QDPAATENNF ATAALISNET DSLNQATLAV PEEPVIQVTE ASVPSFVSQQ ENQLQDEALT 240
  241 SNSKNADAIG ASDANVATAP KSWADLIARN HPDVKSQASV SSTASTTGQT VKGVNADQTQ 300
  301 QPTAPYTQSN ELLETSVFVK NIPPETSDVS LKSAMSIFGP VKAIEFARRK GTAYVDFVNH 360
  361 ECVQLALNKK TLQINNATLN IEERRRLFSG KFNKSGDKKS NDNYNGMKRN FRKGNRGAFD 420
  421 GRSKEVTTSK KQNN

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

No microscopy data found in the PDR for this protein.

Protein Structure Data

[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..138]	PSI-BLAST	31.0	Nuclear transport factor-2 (NTF2)
2	View Details	[139..199]	deduced	N/A	No confident structure predictions are available.
3	View Details	[200..434]	PSI-BLAST	27.30103	Poly(A)-binding protein

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
protein binding	1.74084472095013	bayes_pls_golite062009
binding	1.29138202593822	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.983337869604082	bayes_pls_golite062009
protein transporter activity	0.960383711156379	bayes_pls_golite062009
kinase activity	0.871357091497469	bayes_pls_golite062009
protein serine/threonine kinase activity	0.797931524291551	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.662760637049546	bayes_pls_golite062009
protein kinase activity	0.622060011038738	bayes_pls_golite062009
transporter activity	0.55283159394909	bayes_pls_golite062009
Ran GTPase binding	0.437541267934309	bayes_pls_golite062009
transferase activity	0.250005906709975	bayes_pls_golite062009
nucleic acid binding	0.0725168535072961	bayes_pls_golite062009

2

No functions predicted.

3

Term	Confidence	Notes
nucleic acid binding	2.43517729895315	bayes_pls_golite062009
binding	2.41127885655304	bayes_pls_golite062009
RNA binding	1.96321378335448	bayes_pls_golite062009
protein binding	1.52056358240529	bayes_pls_golite062009
mRNA binding	0.79383576791259	bayes_pls_golite062009
small conjugating protein ligase activity	0.681978520687901	bayes_pls_golite062009
ubiquitin-protein ligase activity	0.494091580976874	bayes_pls_golite062009
acid-amino acid ligase activity	0.257073928625242	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle