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Protein Overview: cnd1

General Information:
Name(s) found: cnd1 / SPBC776.13 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • condensin subunit Cnd1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1158 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    inner kinetochore of condensed chromosome [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    condensin complex [IDALink to PubMed article]
    Biological Process: mitotic chromosome condensation [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLDLLSRLK KYIHDEENSD LDSIYAECEN AGLTAVVNDV IDTLLLGTSS CFDEDCLEKL  60
   61 FAICSHFADL SSSVRNKVYD LLTSNISSES AILEDMISAN ATDFTVPQTN LETTGIAFQL 120
  121 TVNSLSSSNQ LSVIRSSTNT VKGRKKNPTT NSNWNGISHV NALLDAIITL FQKKLSRVWT 180
  181 TSSERDMFLS LFLKPIYTLM ESEINIKNAS FRSRLFNIIG LAVQFHNHTT AAETNIIQNL 240
  241 QYFEHLSEYA ADLVHIVTVQ FNSVTLAEGI IRTLCSLEFN DNDVKGPKQV ALFLVRLSSL 300
  301 IPNLCLKQLT QLVKLLDSES YTLRCAIIEV LANVVIDQIH DEAQNEMSES VPATVQSLMD 360
  361 LLSERLLDIS PYCRTKVLHV FIKIFDLPIK YPRKRQEIAE LVIRCLQDRS SHVRRNAIKL 420
  421 FSKLLTTHPF SVMHNGLLTR NIWEKGLSII EEQLNSLQPK QQEKVVDSEL EVDENLLEDA 480
  481 TMIQDDESHE GESHLENSLS EYVDSVPAEE IVKVNLTKRF YLEALQYIDI VEAGAKIISQ 540
  541 LLFAKNKSEV IESMDFFVFC NSFGISSSKL YIKKMIHLIW VKGTSDEGNN IQNHVLSCYK 600
  601 TLFFEPPPNS GTNEAANYIA RNLISLTYDA SLAELTSLEQ MLCILMKDGY FSHLVITKLW 660
  661 QVYSYQKKDI SRTQRRGSII VIGMLALGNT DVVMQGLDHL IQIGLGPPGL EDLVLARYTC 720
  721 IAIKRIGKDA SGSSNINFPN SHTLCQKLCM LLLRPSFSEE WFGLEEQAIE AIYAVAKHPD 780
  781 ELCTNIILLL TKQLFKPSNH ENTTSNDDHA MDEDLDDSPE EETLKDEEEI GIRLAHLIFL 840
  841 VGHVAIKQLV YIEYCEAEFK RRKADAERLA VQNSNNPING QETSEYDLIT GTSEDDFSEA 900
  901 MTFIRERELL YGENSLLSRF APLVVELCSN HKSHNNQSLL LAASLTLSKF MCLSNNFCME 960
  961 HLPLLITILE KCDNPIIRNN LVIGLADLTV CFNHFIDEIS EYLYRRLMDE ESSVKKTCFM1020
 1021 TLAFLILAGQ IKVKGQLGIM ARSLEDEDAR ISDLARMFFT DFAAKDNSVY NNFIDIFSVL1080
 1081 SRSAEEQDED DAKFKRIIRF LTSFIEKERH TKQLAERLAA RLDRCKTQRQ WDHVVYALSL1140
 1141 LPHKADNIQK LIDDGYHE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..202] deduced N/A No confident structure predictions are available.
    2 View Details [203..877] FFAS03 2.28 Adaptin beta subunit N-terminal fragment
    3 View Details [878..1158] PSI-BLAST 60.221849 Adaptin beta subunit N-terminal fragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.96084803796407 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69616509670156 bayes_pls_golite062009
  • protein transporter activity
    		•  2.20824633932947 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.19067997822967 bayes_pls_golite062009
  • DNA binding
    		•  1.96172460362671 bayes_pls_golite062009
  • protein binding
    		•  1.61131270705552 bayes_pls_golite062009
  • transporter activity
    		•  1.44589191111517 bayes_pls_golite062009
  • transcription factor activity
    		•  1.21493607378314 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.19535295481088 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.66737572008694 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.338017015160581 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  0.320459307923303 bayes_pls_golite062009
  • structural molecule activity
    		•  0.279533827088985 bayes_pls_golite062009
  • RNA binding
    		•  0.243875756041061 bayes_pls_golite062009
  • transcription activator activity
    		•  0.142253868848261 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.0946244209704199 bayes_pls_golite062009
  • transcription factor binding
    		•  8.79739237675814E-4 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle