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Protein Overview: atf1

General Information:
Name(s) found: atf1 / SPBC29B5.01 [Sanger Pombe]
Description(s) found:
Found 27 descriptions.
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  • transcription factor Atf1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 566 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nuclear chromatin [NASLink to PubMed article]
    Biological Process: regulation of histone methylation [IMPLink to PubMed article]
    regulation of cAMP-mediated signaling [IMPLink to PubMed article]
    regulation of histone acetylation [IMPLink to PubMed article]
    regulation of transcription, DNA-dependent [TASLink to PubMed article]
    cellular response to starvation [IMPLink to PubMed articleLink to PubMed article]
    response to hydrogen peroxide [IGILink to PubMed article]
    negative regulation of reciprocal meiotic recombination [IMPLink to PubMed article]
    cellular response to nitrogen starvation [IMPLink to PubMed article]
    activation of reciprocal meiotic recombination [IMPLink to PubMed article]
    [NOT]response to arsenic [IGILink to PubMed article]
    regulation of chromatin disassembly [IMPLink to PubMed article]
    regulation of chromatin assembly [IMPLink to PubMed article]
    G1 phase of mitotic cell cycle [IMPLink to PubMed article]
    mRNA export from nucleus in response to heat stress [IMPLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    positive regulation of transcription, meiotic [IDALink to PubMed article]
    regulation of reciprocal meiotic recombination [IMPLink to PubMed article]
    Molecular Function: DNA binding [TASLink to PubMed article]
    transcription factor activity [IDALink to PubMed article]
    RNA binding [IDALink to PubMed article]
    protein binding [IPILink to PubMed article]
    protein homodimerization activity [IPILink to PubMed article]
    protein heterodimerization activity [IPILink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]
    recombination hotspot binding [IDALink to PubMed article]
    sequence-specific DNA binding [IDALink to PubMed article]
    promoter binding [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPSPVNTST EPASVAAVSN GNATASSTQV PENNQSDSFA PPSNNSQQNQ QSSTIAPNGG  60
   61 AGSVANANPA DQSDGVTPSF VGSLKLDYEP NPFEHSFGST ASVGQGNPSL NRNPSLSNIP 120
  121 SGVPPAFART LLPPVSSIAS PDILSGAPGI ASPLGYPAWS AFTRGTMHNP LSPAIYDATL 180
  181 RPDYLNNPSD ASAAARFSSG TGFTPGVNEP FRSLLTPTGA GFPAPSPGTA NLLGFHTFDS 240
  241 QFPDQYRFTP RDGKPPVVNG TNGDQSDYFG ANAAVHGLCL LSQVPDQQQK LQQPISSEND 300
  301 QAASTTANNL LKQTQQQTFP DSIRPSFTQN TNPQAVTGTM NPQASRTQQQ PMYFMGSQQF 360
  361 NGMPSVYGDT VNPADPSLTL RQTTDFSGQN AENGSTNLPQ KTSNSDMPTA NSMPVKLENG 420
  421 TDYSTSQEPS SNANNQSSPT SSINGKASSE SANGTSYSKG SSRRNSKNET DEEKRKSFLE 480
  481 RNRQAALKCR QRKKQWLSNL QAKVEFYGNE NEILSAQVSA LREEIVSLKT LLIAHKDCPV 540
  541 AKSNSAAVAT SVIGSGDLAQ RINLGY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..122] MSA 1.158995 View MSA. No confident structure predictions are available.
    2 View Details [123..204] MSA 3.166995 View MSA. No confident structure predictions are available.
    3 View Details [205..356] MSA 4.171995 View MSA. No confident structure predictions are available.
    4 View Details [357..453] deduced N/A No confident structure predictions are available.
    5 View Details [454..566] PSI-BLAST 15.69897 C/ebp beta


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.74

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle