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Protein Overview: pap1

General Information:
Name(s) found: pap1 / SPAC1783.07c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • transcription factor Caf3 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 552 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    NuA4 histone acetyltransferase complex [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: [NOT]response to arsenic [IGILink to PubMed article]
    response to methylglyoxal [IMPLink to PubMed article]
    cellular response to oxidative stress [IMPLink to PubMed article]
    regulation of transcription, DNA-dependent [TASLink to PubMed article]
    response to caffeine [IMPLink to PubMed article]
    histone acetylation [IC]
    response to hydrogen peroxide [IGILink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    cellular response to nitrogen starvation [IEP]
    Molecular Function: transcription factor activity [TASLink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]
    sequence-specific DNA binding [IEA]
    protein dimerization activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGQTETLSS TSNIPIAKAE PEQSADFSAS HKKRGPVSDR SSRRTSSEEV DLMPNVDDEV  60
   61 DGDVKPKKIG RKNSDQEPSS KRKAQNRAAQ RAFRKRKEDH LKALETQVVT LKELHSSTTL 120
  121 ENDQLRQKVR QLEEELRILK DGSFTFEMSL PHRNPSLSSL PTTGFSSNFA HMKDGISPQS 180
  181 NLHLSPNSIE KPNMHQNVLH NDRSADNLNH RYQVPPTLVD SNSAQGTLSP ETPSSSDSPS 240
  241 NLYLNYPKRK SITHLHHDCS ALSNGENGED VADGKQFCQK LSTACGSIAC SMLTKTTPHR 300
  301 ASVDILSNLH ESTVSPPMAD ESVQRSSEVS KSIPNVELSL NVNQQFVSPF GGTDSFPLPT 360
  361 DTGLDSLFEP DSAIENSHLK NVVMEPELFQ AWREPAESLD KEFFNDEGEI DDVFHNYFHN 420
  421 SNENGDLITN SLHGLDFLEN ANESFPEQMY PFIKHNKDYI SNHPDEVPPD GLPQKGKHDT 480
  481 SSQMPSENEI VPAKERAYLS CPKVWSKIIN HPRFESFDID DLCSKLKNKA KCSSSGVLLD 540
  541 ERDVEAALNQ FN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..162] PSI-BLAST 9.0 PAP1
    2 View Details [163..356] MSA 8.138992 View MSA. No confident structure predictions are available.
    3 View Details [357..475] deduced N/A No confident structure predictions are available.
    4 View Details [476..552] PSI-BLAST 23.39794 Solution structure of the oxidized form of the Yap1 redox domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle